Table 2. Differentially expressed genes in mastitis mammary tissues with respect to normal mammary tissues.

Gene symbol	Representative public ID	Normal	Mastitis	Fold-change [log2(m/n)]
Up-regulated genes in mastitis mammary tissues
TICAM2	NM_001046456	8.05	9.35	1.30
PIK3CA	NM_174574	4.63	5.96	1.33
STAT1	NM_001077900	0.65	2.06	1.41
IL10	NM_174088	10.06	11.55	1.49
IKBKG	NM_174354	-6.64	-4.98	1.66
MAPK11	NM_001080335	-6.64	-4.98	1.66
IFNAR2	NM_174553	2.48	6.85	1.77
TLR6	NM_001001159	2.48	3.32	1.78
CASP8	NM_001045970	-1.41	0.40	1.81
TAB2	NM_001192372	-1.41	0.40	1.81
MAPK8	NM_001192974	1.65	4.29	2.75
MAP2K2	NM_001038071	-1.41	2.06	3.47
MAPK10	NM_001083728	-1.41	2.48	3.90
MyD88	NM_001014382	-4.98	1.25	6.23
TLR9	NM_183081	-6.64	0.40	7.04
IRAK1	NM_001040555	-4.98	2.58	7.56
TLR4	NM_174198	-6.64	2.19	8.83
TLR7	NM_001033761	-6.64	2.58	9.22
IL6ST	XM_600430	-1.41	0.40	1.81
Down-regulated genes in mastitis mammary tissues
CD14 molecule	NM_174008	2.48	-4.98	-7.47
CXCL11	CK959898	1.87	-4.98	-6.86
MAPK14	NM_001102174	1.87	-4.98	-6.86
TLR3	NM_001008664	0.65	-4.98	-5.63
MAP2K3	NM_001083693	9.31	3.84	-5.47
NFKB1	NM_001076409	11.56	7.84	-3.72
IFNAC	NM_174085	-1.41	-4.98	-3.57
IFNW1	NM_174351	-1.41	-4.98	-3.57
MAP2K6	NM_001034045	-1.41	-4.98	-3.57
TLR8	NM_001033937	-1.41	-4.98	-3.57
CXCL10	NM_001046551	6.49	2.98	-3.51
IRF5	NM_001035465	3.79	0.40	-3.40
TNF	NM_173966	7.72	5.00	-2.72
IL12A	CB168830	5.96	3.54	-2.42
AKT1	NM_173986	3.32	1.25	-2.07
RELA	NM_001080242	5.21	3.32	-1.89
IRF7	NM_001105040	11.28	9.46	-1.82
IKBKE	NM_001046345	2.19	0.40	-1.79
NFKBIA	NM_001045868	5.40	3.66	-1.74
TLR1	NM_001046504	4.78	2.58	-1.65
JUN	NM_001077827	5.40	4.25	-1.54
TBK1	NM_001192755	5.79	3.32	-1.45
MAPK13	NM_001014947	5.96	4.82	-1.38
IL1B	NM_174093	7.43	6.14	-1.29
MAP3K7	NM_001081595	5.79	4.51	-1.29
PIK3CD	NM_001205548	12.65	11.45	-1.19
FOS	NM_182786	1.54	0.40	-1.15
IRAK4	NM_001075998	3.19	2.06	-1.13
IRF3	NM_001029845	3.62	2.58	-1.04