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. Author manuscript; available in PMC: 2015 Feb 24.
Published in final edited form as: Nat Commun. 2014 Jun 13;5:3934. doi: 10.1038/ncomms4934

Figure 3. Imputation accuracy at SNPs and Indels using the CG2 data.

Figure 3

The imputation performance at SNPs and indels are shown with the orange and green lines, respectively. Performance at all indels, isolated indels and non-isolated indels are shown using plain, dashed and dotted lines. An indel is isolated when no other indels is in the 50bp flanking regions. The x-axis shows the non-reference allele frequency of the SNP being imputed. The y-axis shows imputation accuracy measure by aggregate R2.