Table 2. Genetic diversity and dataset length for different species and molecular survey approaches.
| MLST | SNP | Genome | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chromosome I | Chromosome II | Chromosome I | Chromosome II | ||||||||
| Mean | Variance | Mean | Variance | Mean | Variance | Mean | Variance | Mean | Variance | ||
| Bp | theta | 36.05 | 127.39 | 7807.03 | 5593613.54 | 4333.68 | 1724029.33 | 4666.60 | 1999005.02 | 2187.99 | 439709.21 |
| pi | 4.45E–03 | 5.15E–06 | 9.58E–02 | 2.18E–03 | 9.69E–02 | 2.24E–03 | 5.67E–03 | 7.66E–06 | 7.14E–03 | 1.21E–05 | |
| length | 3518.00 | 31189.00 | 17313.00 | 289172.00 | 108654.00 | ||||||
| Br | theta | 112.58 | 1205.64 | 914.77 | 78109.73 | 234.25 | 5161.72 | 635.85 | 37782.92 | 2046.37 | 390305.58 |
| pi | 1.00E–02 | 2.46E–05 | 8.01E–02 | 1.54E–03 | 7.66E–02 | 1.43E–03 | 7.96E–03 | 1.52E–05 | 1.62E–02 | 6.25E–05 | |
| length | 4409.00 | 3628.00 | 929.00 | 24110.00 | 36223.00 | ||||||
| Yp | theta | 36.17 | 120.42 | 3204.65 | 883301.99 | 527.40 | 24020.48 | ||||
| pi | 4.97E–04 | 6.68E–08 | 5.60E–02 | 7.40E–04 | 4.55E–04 | 4.94E–08 | |||||
| length | 20498.00 | 14116.00 | 281149.00 | ||||||||
Notes.
- Bp
- Burkholderia pseudomallei
- Br
- Brucella spp.
- Yp
- Yersinia pestis