Table 1.
Computational studies for prediction of PHIs.
| Pathogen-host system | References |
|---|---|
| Plasmodium falciparum-Human | Krishnadev and Srinivasan, 2008 |
| Lee et al., 2008 | |
| Wuchty, 2011 | |
| Dyer et al., 2007 | |
| Helicobacter pylori-Human | Kim et al., 2007; Tyagi et al., 2009 |
| Hepatitis C virus (HCV)-Human | Cui et al., 2012; Zheng et al., 2014 |
| Phage T4-Escherichia coli | Krishnadev and Srinivasan, 2011 |
| Phage lambda-E. coli | Krishnadev and Srinivasan, 2011 |
| C. albicans-Zebrafish | Wang et al., 2013 |
| E. coli-Human | Krishnadev and Srinivasan, 2011 |
| Plasmodium berghei-Mouse | Reid and Berriman, 2013 |
| Plasmodium berghei-Insect vector (Mosquito) | Reid and Berriman, 2013 |
| Oral microbial-Human | Coelho et al., 2014 |
| Salmonella-Human | Krishnadev and Srinivasan, 2011 |
| Arnold et al., 2012 | |
| Kshirsagar et al., 2012 | |
| Kshirsagar et al., 2013b | |
| Schleker et al., 2012a | |
| Mei and Zhu, 2014 | |
| Schleker et al., 2014 (Review) | |
| Mycobacterium Tuberculosis H37Rv-Human | Zhou et al., 2014 |
| Yersinia pestis-Human | Krishnadev and Srinivasan, 2011 |
| Kshirsagar et al., 2012 | |
| Kshirsagar et al., 2013b | |
| Mycobacterium apicomplexa and Mycobacterium kinetoplastida-Human | Davis et al., 2007 |
| Xanthomonas oryzae-Rice | Kim et al., 2008 |
| HTLV-Human | Mei, 2014 |
| HIV1-Human | Evans et al., 2009 |
| Tastan et al., 2009 | |
| Mei, 2013 | |
| Qi et al., 2010 | |
| Dyer et al., 2011 | |
| Ray et al., 2012 | |
| Doolittle and Gomez, 2010 | |
| Nouretdinov et al., 2012 | |
| Mukhopadhyay et al., 2010, 2012, 2014 | |
| Mondal et al., 2012 | |
| 36 viral species-Human | Franzosa and Xia, 2011 |
| Influenza A NS1–Human | De Chassey et al., 2013 |
| HPV16–Human | Dong et al., in press |
| Bacillus anthracis-Human | Kshirsagar et al., 2013b |
| Francisella tularensis-Human | Kshirsagar et al., 2013b |
| Dengue virus-Human | Doolittle and Gomez, 2011 |
| Segura-Cabrera et al., 2013 | |
| Insect vector A. aegypti-Human | Doolittle and Gomez, 2011 |
| Salmonella-Arabidopsis | Schleker et al., 2012a |
| Schleker et al., 2014 (Review) | |
| Human papilloma viruses (HPV)-Human | Cui et al., 2012 |
| R. solanacearum-Arabidopsis | Li et al., 2012 |
| Y. pestis, M. tuberculosis, C. diphtheriae, C. ulcerans, E. coli, and C. pseudotuberculosis-Human, Goat, Sheep, and Horse | Barh et al., 2013 |