TABLE 1.
Nucleotide substitution rates and times to most recent common ancestor (TMRCAs) of H2N2 segments analyzed
Origin and gene | Lineage | Nucleotide substitution rate (subs/site/yr) |
TMRCA (yr) |
||||
---|---|---|---|---|---|---|---|
Mean | 95% HPD |
Mean | 95% HPD |
||||
Lower | Upper | Lower | Upper | ||||
Avian | |||||||
HA | Human H2N2 | 3.59E−03 | 3.00E−03 | 4.22E−03 | 1955.39 | 1956.25 | 1954.47 |
Avian H2N2 | 3.50E−03 | 3.00E−03 | 4.06E−03 | 1949.03 | 1956.77 | 1940.95 | |
NA | Human H2N2 | 0.91E−03 | 0.68E−03 | 1.15E−03 | 1951.47 | 1954.11 | 1948.73 |
Avian H2N2 | 2.57E−03 | 2.24E−03 | 2.89E−03 | 1954.89 | 1961.33 | 1948.16 | |
PB1 | Human H2N2 | 1.13E−03 | 0.89E−03 | 1.38E−03 | 1954.24 | 1955.66 | 1952.66 |
Avian H2N2 | 1.76E−03 | 1.55E−03 | 1.98E−03 | 1973.03 | 1975.40 | 1970.58 | |
Human | |||||||
PB2 | H1N1, H2N2 | 1.46E−03 | 1.25E−03 | 1.67E−03 | 1923.83 | 1928.70 | 1918.34 |
PA | H1N1, H2N2 | 1.30E−03 | 1.09E−03 | 1.51E−03 | 1923.01 | 1928.30 | 1917.38 |
NP | H1N1, H2N2 | 1.46E−03 | 1.20E−03 | 1.73E−03 | 1926.06 | 1929.83 | 1922.18 |
MP | H1N1, H2N2 | 1.08E−03 | 8.69E−04 | 1.29E−03 | 1923.58 | 1928.46 | 1918.52 |
NS | H1N1, H2N2 | 1.73E−03 | 1.27E−03 | 2.19E−03 | 1925.06 | 1929.20 | 1920.55 |