TABLE 3.
Pairwise comparison of percentages of nucleotide identity for GBV-C consensus sequences
| Patient ID | % nucleotide identity to GBV-C consensus sequencea: |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G3670.1 | G3764 | G3765.2 | G3789.1 | G3795 | G3796 | G3808 | G3819 | G3821 | G3825 | G3826 | G3845 | G3850 | |
| G3670.1 | 100 | ||||||||||||
| G3764 | 90.86 | 100 | |||||||||||
| G3765.2 | 92.46 | 91.36 | 100 | ||||||||||
| G3789.1 | 86.96 | 87.89 | 88.28 | 100 | |||||||||
| G3795 | 91.30 | 90.92 | 92.79 | 88.11 | 100 | ||||||||
| G3796 | 91.36 | 90.97 | 92.79 | 88.11 | 98.46 | 100 | |||||||
| G3808 | 94.22 | 91.52 | 92.68 | 88.61 | 92.18 | 92.13 | 100 | ||||||
| G3819 | 91.36 | 91.41 | 91.30 | 87.34 | 91.19 | 91.03 | 91.03 | 100 | |||||
| G3821 | 92.46 | 92.24 | 92.63 | 88.61 | 92.24 | 92.35 | 92.85 | 91.74 | 100 | ||||
| G3825 | 91.41 | 90.53 | 93.40 | 87.78 | 91.74 | 91.85 | 92.13 | 91.47 | 92.07 | 100 | |||
| G3826 | 92.02 | 91.80 | 91.80 | 88.72 | 91.41 | 91.63 | 91.69 | 91.63 | 92.57 | 92.07 | 100 | ||
| G3845 | 90.97 | 91.14 | 92.63 | 87.89 | 95.60 | 95.82 | 91.85 | 90.75 | 92.18 | 91.52 | 91.30 | 100 | |
| G3850 | 92.18 | 92.29 | 92.29 | 87.40 | 91.69 | 91.96 | 92.68 | 91.36 | 92.24 | 91.69 | 92.13 | 91.85 | 100 |
Pairwise comparisons of GBV-C consensus sequences were generated by aligning sequences with ClustalW. After manual adjustment, the percent nucleotide identity was calculated from the resulting 1,800-bp alignment.