Table 3.
Sword-specific DEGs from the limited gene set (TV and CV, TV and TD, TV and TM) between tissues and treatments
| ID | Gene name | Ensembl Gene id | Ensembl Gene description |
|---|---|---|---|
| Up-regulated in developing sword | |||
| CUFF.36200.1 | AGTR1 | ENSXMAG00000020155 | Angiotensin II receptor, type 1 [Source:HGNC Symbol;Acc:336] |
| CUFF.22492.1 | ANGPTL5 | ENSXMAG00000010840 | Angiopoietin-like 5 [Source:HGNC Symbol;Acc:19705] |
| CUFF.15255.1 | ANO5 (1 of 2) | ENSXMAG00000007021 | Anoctamin 5 [Source:HGNC Symbol;Acc:27337] |
| CUFF.1503.1 | ASIP | ENSXMAG00000012156 | Agouti signaling protein [Source:HGNC Symbol;Acc:745] |
| CUFF.38557.1 | BCAN (2 of 2) | ENSXMAG00000015085 | Brevican [Source:HGNC Symbol;Acc:23059] |
| CUFF.11483.1 | CKAP4 | ENSXMAG00000001319 | Cytoskeleton-associated protein 4 [Source:HGNC Symbol;Acc:16991] |
| CUFF.35437.1 | COL10A1 (2 of 2) | ENSXMAG00000020162 | Collagen, type X, alpha 1 [Source:HGNC Symbol;Acc:2185] |
| CUFF.40385.1 | DSTN | ENSXMAG00000006139 | Destrin (actin depolymerizing factor) [Source:HGNC Symbol;Acc:15750] |
| CUFF.24718.1 | ECEL1 (1 of 2) | ENSXMAG00000002319 | Endothelin converting enzyme-like 1 [Source:HGNC Symbol;Acc:3147] |
| CUFF.37038.1 | FKBP9 | ENSXMAG00000003160 | FK506 binding protein 9, 63 kDa [Source:HGNC Symbol;Acc:3725] |
| CUFF.7252.1 | GFRA1 (1 of 2) | ENSXMAG00000014650 | GDNF family receptor alpha 1 [Source:HGNC Symbol;Acc:4243] |
| CUFF.22162.1 | GJA1 | ENSXMAG00000005269 | Gap junction protein, alpha 1, 43 kDa [Source:HGNC Symbol;Acc:4274] |
| CUFF.12280.1 | INHBB (1 of 2) | ENSXMAG00000006435 | Inhibin, beta B [Source:HGNC Symbol;Acc:6067] |
| CUFF.12283.1 | INHBB (1 of 2) | ENSXMAG00000006435 | Inhibin, beta B [Source:HGNC Symbol;Acc:6067] |
| CUFF.27942.1 | KCNH8 | ENSXMAG00000000864 | Potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:HGNC Symbol;Acc:18864] |
| CUFF.27947.1 | KCNH8 | ENSXMAG00000000864 | Potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:HGNC Symbol;Acc:18864] |
| CUFF.25856.1 | LURAP1 (1 of 2) | ENSXMAG00000002255 | Leucine rich adaptor protein 1 [Source:HGNC Symbol;Acc:32327] |
| CUFF.17142.1 | MMP20 | ENSXMAG00000001558 | Matrixmetallopeptidase 20 [Source:HGNC Symbol;Acc:7167] |
| CUFF.26478.1 | PANX3 | ENSXMAG00000006184 | Pannexin 3 [Source:HGNC Symbol;Acc:20573] |
| CUFF.33889.1 | PAX9 | ENSXMAG00000015762 | Paired box 9 [Source:HGNC Symbol;Acc:8623] |
| CUFF.15331.1 | PDIA4 | ENSXMAG00000018874 | Protein disulfide isomerase family A, member 4 [Source:HGNC Symbol;Acc:30167] |
| CUFF.25172.1 | PMEL (1 of 2) | ENSXMAG00000003314 | Premelanosome protein [Source:HGNC Symbol;Acc:10880] |
| CUFF.15589.1 | PPIC | ENSXMAG00000015311 | Peptidylprolylisomerase C (cyclophilin C) [Source:HGNC Symbol;Acc:9256] |
| CUFF.25279.1 | RCN1 | ENSXMAG00000014239 | Reticulocalbin 1, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:9934] |
| CUFF.11860.1 | RCN3 | ENSXMAG00000002579 | Reticulocalbin 3, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:21145] |
| CUFF.25595.1 | SLC13A5 (1 of 2) | ENSXMAG00000004065 | Solute carrier family 13 (sodium-dependent citrate transporter), member 5 [Source:HGNC Symbol;Acc:23089] |
| CUFF.5285.1 | STAC2 (2 of 2) | ENSXMAG00000002187 | SH3 and cysteine rich domain 2 [Source:HGNC Symbol;Acc:23990] |
| CUFF.26167.1 | TBX3 | ENSXMAG00000005372 | T-box 3 [Source:HGNC Symbol;Acc:11602] |
| CUFF.36189.1 | TENC1 (2 of 2) | ENSXMAG00000018693 | Tensin like C1 domain containing phosphatase (tensin 2) [Source:HGNC Symbol;Acc:19737] |
| CUFF.29119.1 | TNC (1 of 2) | ENSXMAG00000004876 | Tenascin C [Source:HGNC Symbol;Acc:5318] |
| CUFF.28413.1 | TNC (2 of 2) | ENSXMAG00000018617 | Tenascin C [Source:HGNC Symbol;Acc:5318] |
| CUFF.28417.1 | TNC (2 of 2) | ENSXMAG00000018617 | Tenascin C [Source:HGNC Symbol;Acc:5318] |
| CUFF.23730.1 | TRPC6 (1 of 2) | ENSXMAG00000010842 | Transient receptor potential cation channel, subfamily C, member 6 [Source:HGNC Symbol;Acc:12338] |
| CUFF.26841.1 | TYR (1 of 2) | ENSXMAG00000011209 | Tyrosinase [Source:HGNC Symbol;Acc:12442] |
| CUFF.25560.1 | TYRP1 (2 of 2) | ENSXMAG00000004910 | Tyrosinase-related protein 1 [Source:HGNC Symbol;Acc:12450] |
| CUFF.4663.1 | XDH | ENSXMAG00000003461 | Xanthine dehydrogenase [Source:HGNC Symbol;Acc:12805] |
| CUFF.11637.1 | #N/A | ENSXMAG00000005039 | Fibulin-7 isoform 1 |
| CUFF.12274.1 | #N/A | #N/A | #N/A |
| CUFF.17007.1 | #N/A | ENSXMAG00000018184 | A fish specific (TGD) ortholog of hedgehog interacting protein like 1 |
| CUFF.22535.1 | #N/A | ENSXMAG00000011006 | Neurexin 2a |
| CUFF.23770.1 | #N/A | #N/A | NILT2 leucocyte receptor |
| CUFF.31467.1 | #N/A | ENSXMAG00000015953 | Tubulin alpha |
| CUFF.31478.1 | #N/A | ENSXMAG00000015953 | Tubulin alpha-1a chain |
| CUFF.33581.1 | #N/A | ENSXMAG00000003979 | OX-2 membrane glycol |
| CUFF.4179.1 | #N/A | #N/A | GDNF family receptor alpha-1-like |
| CUFF.7419.1 | #N/A | ENSXMAG00000000509 | Connexin |
| CUFF.8191.1 | #N/A | ENSXMAG00000006973 | Spondin-1 precursor |
| CUFF.8192.1 | #N/A | ENSXMAG00000006973 | Spondin-1 precursor |
| Down-regulated in developing sword | |||
| CUFF.35587.1 | #N/A | #N/A | Pro-neuregulin- membrane-bound isoform |
| CUFF.12776.1 | #N/A | #N/A | #N/A |