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. 2015 Feb 24;10(2):e0117392. doi: 10.1371/journal.pone.0117392

Table 2. Nodulation genes detected in the genome of Bradyrhizobium sp. DOA9 and higher BLASTP similarity with other microorganisms.

Gene Locus tag Percentage of identity in BLASTP
Chromosome
nolG BDOA9_0103430 Bradyrhizobium sp. BTAi1 (91%), B. japonicum USDA110 (90%), Bradyrhizobium sp. ORS278 (76%), R. leguminosarum bv. viciae 3841 (74%)
nolG BDOA9_0108870 B. japonicum USDA110 (95%), Bradyrhizobium sp. ORS278 (83%), Bradyrhizobium sp. BTAi1 (83%), A. caulinodans ORS571 (56%)
nodV BDOA9_0120640 B. japonicum WSM2793 (40%), Methylobacterium sp. 10 (31%), Rhizobium sp. PDO1–076 (31%)
nodQ BDOA9_0121760 B. japonicum USDA110 (96%), Bradyrhizobium sp. ORS278 (80%), Bradyrhizobium sp. BTAi1 (80%), A. caulinodans ORS571 (60%)
nodW BDOA9_0136710 B. japonicum USDA110 (76%), S. meliloti 1021 (58%)
nodW BDOA9_0136720 B. japonicum USDA110 (66%), R. leguminosarum bv. viciae 3841 (40%)
nodV BDOA9_0136850 B. japonicum USDA110 (67%), S. meliloti 1021 (35%)
nodN BDOA9_0136940 B. japonicum USDA110 (92%), C. taiwanensis LMG 19424 (43%)
nodN BDOA9_0139450 B. japonicum USDA110 (96%), Bradyrhizobium sp. BTAi1 (83%), Bradyrhizobium sp. ORS278 (83%), M. loti MAFF303099 (46%)
nolG BDOA9_0140510 B. japonicum USDA110 (97%), Bradyrhizobium sp. BTAi1 (90%), Bradyrhizobium sp. ORS278 (90%), A. caulinodans ORS571 (76%)
nodV BDOA9_0147240 B. japonicum USDA110 (61%), R. leguminosarum bv. viciae 3841 (32%)
nodW BDOA9_0147250 B. japonicum USDA110 (78%), A. caulinodans ORS571 (62%)
nodW BDOA9_0147260 B. japonicum USDA110 (67%), A. caulinodans ORS571 (45%)
nodV BDOA9_0151030 B. japonicum USDA110 (88%), A. caulinodans ORS571 (34%)
nodW BDOA9_0151040 B. japonicum USDA110 (94%), A. caulinodans ORS571 (67%)
nodW BDOA9_0151050 B. japonicum USDA110 (89%), A. caulinodans ORS571 (44%)
nolG BDOA9_0151210 Bradyrhizobium sp. S23321 (98%), B. japonicum USDA110 (96%)
nodW BDOA9_0151770 B. japonicum USDA110 (89%), R. etli CFN42 (50%), C. taiwanensis LMG 19424 (47%)
nodV BDOA9_0153480 B. japonicum USDA110 (85%), Bradyrhizobium sp. BTAi1 (62%), Bradyrhizobium sp. ORS278 (61%)
nolG BDOA9_0156320 B. japonicum USDA110 (91%), Bradyrhizobium sp. BTAi1 (87%), Bradyrhizobium sp. ORS278 (86%)
nolO BDOA9_0158070 B. japonicum USDA6 (97%), R. etli CFN42 (35%), M. loti MAFF303099 (35%)
nodT BDOA9_0162260 Bradyrhizobium sp. ORS278 (56%), Bradyrhizobium sp. BTAi1 (55%), S. fredii NGR234 (54%)
nolG BDOA9_0165280 B. japonicum USDA110 (97%), Bradyrhizobium sp. BTAi1 (86%), Azospirillum sp. B510 (52%)
Plasmid (pDOA9)
nodW BDOA9_0203300 B. japonicum USDA110 (65%), Azoarcus sp. BH72 (42%)
nodW BDOA9_0203310 B. japonicum USDA110 (67%), Azoarcus sp. BH72 (57%)
nodQ BDOA9_0203370 Bradyrhizobium sp. ORS278 (53%), Mesorhizobium loti MAFF303099 (48%), Sinorhizobium fredii NGR234 (48%)
nodP BDOA9_0203380 Bradyrhizobium sp. ORS278 (73%), Azospirillum sp. B510 (71%), Bradyrhizobium sp. BTAi1 (70%)
noeE BDOA9_0203390 S. fredii NGR234 (55%)
nodW BDOA9_0203420 Mesorhizobium sp. WSM4349 (33%), S. terangae WSM1721 (31%)
noeI BDOA9_0203430 B. japonicum USDA110 (73%), S. fredii NGR234 (71%)
nolA BDOA9_0203490 Bradyrhizobium sp. NC92 (62%), Mesorhizobium sp. WSM4349 (60%), Bradyrhizobium sp. ORS 285 (47%)
nodD1 BDOA9_0203500 Rhizobium etli CFN42 (63%), B. japonicum USDA110 (62%), S. meliloti 1021 (61%), S. fredii NGR234 (61%)
nodA1 BDOA9_0206740 Bradyrhizobium sp. WSM1417 (36%), Rhizobium etli CFN42 (34%), B. japonicum USDA110 (32%)
nodB BDOA9_0203510 S. fredii NGR234 (65%), S. fredii HH103 (65%), B. japonicum USDA110 (62%), Azorhizobium caulinodans ORS571 (42%), Azospirillum sp. B510 (35%)
nodC BDOA9_0203520 B. japonicum USDA110 (69%), M. loti R7A (68%), R. etli CFN42 (66%)
nodS BDOA9_0203530 S. fredii NGR234 (59%), R. etli CFN42 (55%), M. loti MAFF303099 (55%), B. japonicum USDA6 (52%)
nodU BDOA9_0203540 B. japonicum USDA110 (69%), Cupriavidus taiwanensis LMG 19424 (64%), A. caulinodans ORS571 (54%)
nodI BDOA9_0203550 M. loti MAFF303099 (70%), S. meliloti 1021 (70%), R. etli CFN42 (68%)
nolO BDOA9_0203560 B. japonicum USDA110 (68%), M. loti MAFF303099 (67%), Rhizobium sp. NGR234 (67%), R. etli CFN42 (65%)
nodZ BDOA9_0203570 R. etli CFN42 (66%), M. loti MAFF303099 (66%), S. fredii NGR234 (64%)
noeL BDOA9_0203580 B. japonicum USDA110 (91%), Bradyrhizobium sp. BTAi1 (84%)
nolK BDOA9_0203590 B. japonicum USDA110 (89%), Bradyrhizobium sp. BTAi1 (80%), Bradyrhizobium sp. ORS278 (80%)
nodV BDOA9_0203630 B. japonicum USDA110 (50%)
nodJ BDOA9_0203700 R. etli CFN42 (66%), M. loti MAFF303099 (64%), S. fredii NGR234 (64%), R. leguminosarum bv. viciae 3841 (64%)
nodI BDOA9_0203710 B. japonicum USDA110 (47%), M. loti MAFF303099 (38%)
nodA2 BDOA9_0203720 B. japonicum USDA110 (71%), S. fredii NGR234 (70%), M. loti R7A (69%), C. taiwanensis LMG 19424 (69%)
nolY BDOA9_0203790 B. japonicum USDA110 (42%), S. fredii NGR234 (33%)
nodV BDOA9_0205070 B. japonicum USDA110 (85%), Bradyrhizobium sp. BTAi1 (79%), Bradyrhizobium sp. ORS278 (79%)
nodD2 BDOA9_0205810 B. japonicum USDA110 (69%), S. meliloti 1021 (66%), R. leguminosarum bv. viciae 3841 (63%)