Table 2.
Genes down-regulated in Luna Rossa cultivar (2-fold change) recognised by DAVID and reported in functional annotation chart (FACH) on number, percentage of gene included, P value, fold enrichment (F. E.), and statistical significance Bonferroni, Benjamini, and FDR
| Category | Down-regulated (63 recognised) | % | P value | Fold enrichment | Bonferroni | Benjamini | FDR | |
|---|---|---|---|---|---|---|---|---|
| GOTERM_BP_FAT | GO:0019748~secondary metabolic process: (X55195) chalcone synthase (X86452) lycopene beta-cyclase (S36691) phytoene desaturase (BT012712) phytoene synthetase |
6.3 | 0.010 | 7.27 | 0.43 | 0.43 | 9.08 | |
| GOTERM_BP_FAT | GO:0008610~lipid biosynthetic process: (AJ242551) 12-oxophytodienoate reductase (X86452) lycopene beta-cyclase (S36691) phytoene desaturase (BT012712) phytoene synthetase |
6.3 | 0.021 | 5.59 | 0.71 | 0.46 | 18.9 | |
| GOTERM_BP_FAT | GO:0016108~tetraterpenoid metabolic process; GO:0016116~carotenoid metabolic process; GO:0016109~tetraterpenoid biosynthetic process; GO:0016117~carotenoid biosynthetic process; carotenoid biosynthesis: (X86452) lycopene beta-cyclase (S36691) phytoene desaturase (BT012712) phytoene synthetase |
4.8 | 0.021 | 10.90 | 0.71 | 0.34 | 19.3 | |
| UP_SEQ_FEATURE | Active site: Proton donor (AJ242551) 12-oxophytodienoate reductase (AY046588) endo-beta-mannanase (X74639) pectin esterase (X04583) precursor polypeptide (AA -71 to 386) |
6.3 | 0.030 | 5.07 | 0.67 | 0.67 | 23.8 | |
| GOTERM_BP_FAT | GO:0046148~pigment biosynthetic process; GO:0042440~pigment metabolic process: (X86452) lycopene beta-cyclase, (BT012712) phytoene synthetase (S36691) phytoene desaturase |
4.8 | 0.031 | 9.08 | 0.84 | 0.37 | 27.0 | |
| GOTERM_BP_FAT | GO:0008299~isoprenoid biosynthetic process; GO:0006721~terpenoid metabolic process GO:0006720~isoprenoid metabolic process GO:0016114~terpenoid biosynthetic process (S36691) phytoene desaturase (BT012712) phytoene synthetase (X86452) lycopene beta-cyclase, |
4.8 | 0.042 | 7.79 | 0.92 | 0.40 | 35.0 | |