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. 2015 Feb 6;16:39. doi: 10.1186/s12859-015-0464-9

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© Song et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Comparison of the stem_mismatch ratios yielded by RKalign and CARNA. Average stem_mismatch ratios of the alignments produced by RKalign and CARNA on the 106 structure pairs selected from Dataset1 and the 124 structure pairs selected from Dataset2 respectively. Error bars are included in the figure. For Dataset1, the average stem_mismatch ratio of RKalign is 10.8% and the average stem_mismatch ratio of CARNA is 23.5%. For Dataset2, the average stem_mismatch ratio of RKalign is 13.1% and the average stem_mismatch ratio of CARNA is 28.9%. RKalign performs significantly better than CARNA in terms of stem_mismatch ratios (Wilcoxon signed rank test, p < 0.05).