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Comparison of SAMtools, PINDEL, PRISM and indelMINER on simulated dataset with 3,723 deletions and 3,777 insertions
| SV caller | Observed indels | False-positives | False-negatives |
|---|---|---|---|
| SAMtools | 6,491 | 172 (2.65%) | 1181 |
| PINDEL | 7,239 | 328 (4.53%) | 589 |
| PRISM | 7,406 | 301 (4.06%) | 395 |
| indelMINER | 7,365 | 263 (3.57%) | 398 |
