Table 3. SNPs called in the HCC1954 cell line.
| Gene | Chromosome | Position | Variation |
|---|---|---|---|
| AKT1 | 14 | 105235824 | rs58565216 |
| AKT1 | 14 | 105236287 | rs35416681 |
| AKT1 | 14 | 105241304 | rs2230506 |
| CAV1 | 7 | 116200554 | rs374946197 |
| HER2 | 17 | 37855834 | rs4252596 |
| HER2 | 17 | 37869895 | - |
| HER2 | 17 | 37870378 | rs2934967 |
| HER2 | 17 | 37871081 | - |
| HER2 | 17 | 37876835 | rs2952156 |
| HER2 | 17 | 37877412 | rs2952157 |
| HER2 | 17 | 37877447 | rs11653998 |
| HER2 | 17 | 37878371 | - |
| HER2 | 17 | 37878574 | - |
| HER2 | 17 | 37878635 | - |
| HER2 | 17 | 37879030 | rs2088126 |
| HER2 | 17 | 37884037 | rs1058808, rs370420724, CM087578 |
| HER2 | 17 | 37885332 | rs2952158 |
| IGFBP3 | 7 | 45957678 | rs3793345 |
| IGFBP3 | 7 | 45960645 | rs2854746, CM057457 |
| IL8 | 4 | 74609045 | rs1126647, CR025956 |
| MAPK1 | 22 | 22115004 | rs6928 |
| MAPK1 | 22 | 22115353 | rs9340 |
| MAPK1 | 22 | 22115498 | rs3810610 |
| MAPK1 | 22 | 22116202 | rs13943 |
| MAPK1 | 22 | 22116467 | rs1063311 |
| PIK3CA | 3 | 178952085 | rs121913279, COSM776, COSM775, COSM249874, COSM94987, COSM94986 |
| PTGS2 | 1 | 186641626 | rs2853805 |
| PTGS2 | 1 | 186642429 | rs2206593 |
| PTGS2 | 1 | 186643058 | rs5275 |
The table displays information about chromosomal location of the detected SNPs in the genes of interest as well as corresponding SNP ID numbers [8]. In case of missing ID numbers (‘-’), we likely inferred a novel mutation.