Table 3.
Genomic location, PCR primers and insertion frequency of polymorphic L1 and Alu insertions. The position of the loci is based on the second draft of the baboon genome at http://genome.ucsc.edu (papAnu2). Three elements could not be located in the draft available at the UCSC website. For these elements, we indicate their location on the Genbank entry from where they were identified.
| Locus name | Chr | Position | F primer | R primer | Insertion frequency | ||||
|---|---|---|---|---|---|---|---|---|---|
| Olive | Hamadryas | Guinea | Yellow | Chacma | |||||
| L1-2 | 3 | 138491225-138492832 | TAAAAGGTCCATGACCAAGT | GGAATGTGCTATCCTAGAAT | 0.89 | 0.06 | 0.00 | 0.70 | 0.00 |
| L1-5 | X | 135688263-135690257 | ATGCAAGGGATGTCATTAAC | TTAATGTTGCTGACAAAGGC | 0.97 | 1.00 | 1.00 | 0.10 | 0.00 |
| L1-8 | 3 | AC099555.4 (77099-79273) | CAACAGCTTCCTGGTAATAT | TGCTGTAGGCTGATCAAATT | 0.68 | 0.83 | 1.00 | 0.50 | 0.00 |
| L1-10 | 11 | 35576759-35577757 | AGTCCTCGGATGAGAGCTACA | TGAAGCATTATCTGCCACTTTT | 0.36 | 0.00 | 0.00 | 0.15 | 0.00 |
| L1-11 | 7 | 18047231-18047723 | CTTCCCCAAACTGGAAGCAT | CCAGATTGCTTTGGGTTCTC | 0.97 | 0.50 | 1.00 | 0.55 | 0.28 |
| L1-18 | 6 | 62190401-62191998 | CTCCAGCCTAAGCCACAGAC | TGCAACTGATTCACCTCCAC | 0.87 | 0.33 | 1.00 | 0.15 | 0.00 |
| L1-20 | 14 | 59736367-59737704 | TGGTATTGGTAGTGCTGTCTGG | CCCCTGAGTCCTGTGAATGT | 0.66 | 0.00 | 0.14 | 0.00 | 0.90 |
| L1-22 | 18 | 56378881-56379383 | CCCCGGTGTTGCTGTATTTA | CGCAGTTGCTGTTGAAAAGA | 0.16 | 0.00 | 0.00 | 0.00 | 0.00 |
| L1-25 | 3 | 149048051-149053338 | ACGCCAGGCAACATACCTAC | TCAAAGGAGGGCTGAGAAAA | 0.87 | 0.28 | 0.36 | 0.35 | 0.00 |
| L1-28 | 3 | 148828133-148828584 | TTTTCCTGCATGGTCACAAA | TTGGATTGCTGTTGGACAAG | 0.45 | 0.72 | 0.00 | 0.15 | 0.00 |
| L1-44 | 4 | 130504588-130505459 | GTAATGGATGCCACTTCCAG | AAGTGAAGTGGGGTTTGACA | 0.09 | 0.00 | 0.07 | 0.10 | 0.00 |
| L1-46 | 3 | 107011307-107011942 | GGAGGAGGGCTCTATTTCTG | TCGGTGTTTAGGGTGTTTGT | 0.75 | 0.00 | 0.07 | 0.10 | 0.00 |
| Alu-4 | 3 | AC091001.3 (107231-108539) | GGCGCAGACCAGGAGATTTT | AGCTGAGTCAATGTCAGTTT | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 |
| Alu-8 | 8 | 17873865-17874025 | TCATGTCATTAGGATAAATGCTGG | CTCCTCTCCAAATATAAATAGCTC | 0.55 | 0.39 | 0.00 | 0.05 | 0.00 |
| Alu-10 | 3 | 44705840-44706597 | CCCTGTGAGCTCATGTTCCT | TCTGAGGGTGCTATGGTTCC | 0.71 | 0.28 | 0.35 | 0.50 | 0.00 |
| Alu-11 | 3 | 44576389-44576922 | GAGCAAATGCCAATTGAGGT | GCAGCATGTATTAAGAGTTGAGTAGC | 0.85 | 0.00 | 0.00 | 0.00 | 0.00 |
| Alu-12 | 20 | AC119422.47 (18145-18811) | TCACTGAGAAGGAAGAATGCTG | TGATGTCAGTGTGTGGAAAGG | 0.82 | 1.00 | 0.86 | 0.05 | 0.00 |
| Alu-14 | 20 | 16990465-16990981 | CCATTGGGTTTTCATCTTTGA | TTCACCCAAGTGCTTTAGGTT | 0.03 | 0.00 | 0.00 | 0.00 | 0.00 |