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. 2014 Nov 18;3:61–62. doi: 10.1016/j.gdata.2014.11.006
Specifications
Organism/cell line/tissue Mus musculus
Sex N/A
Sequencer or array type NGS: Illumina HiSeq2000
Microarray: Illumina MouseRef-8
Data format NGS: raw data in SRA files
Microarray: raw data in TXT files
Experimental factors NGS: mouse oral squamous cell carcinoma cell lines
Microarray: mouse oral squamous cell carcinoma cell lines, metastatic lymph node, control primary C57BL/6 splenocytes
Experimental features
  • 1.

    NGS to determine mutational landscape of mouse oral cancer lines

  • 2.

    Microarray to determine transcriptional landscape of mouse oral cancer lines

  • 3.

    Comparative analysis of genomic and transcriptional data between aggressive and indolent mouse oral cancer lines

  • 4.

    Comparative analysis between mouse model and published human sequencing and microarray data
Consent N/A
Sample source location Saint Louis, MO, United States