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. Author manuscript; available in PMC: 2015 Feb 26.
Published in final edited form as: Proteomics Clin Appl. 2013 Apr;7(0):217–224. doi: 10.1002/prca.201200064

Table 2. Comparison of peptide and sequence coverage of fibronectin and filament Ain FFPE samples on different extraction condition.

Protein FFPE Sample and extraction condition Unique peptide Unique spectra Total Spectra %Sequence coverage
Fibronectin 1 Heat only 37 39 90 18
Heat+Pressure 51 58 215 25
2 Heat only 44 50 244 25
Heat + Pressure 55 65 345 32
Filament A 1 Heat only 38 38 87 19
Heat+ Pressure 63 69 299 32
2 Heat only 60 71 355 33
Heat + Pressure 65 79 419 35