Fig. 5.

Examples of identified pockets. A is the query, 2plw-A that binds SAM. B1 and B2 are retrieved pockets for 2plw-A at the rank 1 and 6, respectively, 3dou_A and 1zq9_A. The TM-Scores between the query and the two proteins are 0.86 and 0.56, and the RMSD values of ligands are 0.65 Å and 1.75 Å, respectively. C, a query, 1gco_A. D1 and D2 are retrieved pockets for 1gco_A at the rank 1 and 8, 1lj8_A and 2jhf_A. TM-scores between the query is 0.40 and 0.38, and RMSD of ligands are 1.00 Å and 2.28 Å, respectively