Table 3.

Frequencies of alleles and genotypes of the 16 SNPs in the 14 cattle breeds

SNPs	SNP frequency*		Genotype frequency
SNP1	A	G	AA	AG	GG
	0.52	0.48	0.29 (111)	0.45 (168)	0.25 (94)
SNP2	T	C	TT	CT	CC
	0.52	0.48	0.30 (112)	0.44 (164)	0.25 (94)
SNP3	G	A	GG	GA	AA
	0.57	0.43	0.35 (132)	0.43 (158)	0.22(80)
SNP4	A	G	AA	AG	GG
	0.72	0.28	0.52 (190)	0.41 (151)	0.07 (27)
SNP5	C	T	CC	CT	TT
	0.73	0.27	0.54 (187)	0.37(127)	0.09(31)
SNP6	C	T	CC	CT	TT
	0.79	0.21	0.63 (227)	0.33 (117)	0.04 (16)
SNP7	A	G	AA	AG	GG
	0.72	0.28	0.54(201)	0.36 (135)	0.10 (38)
SNP8	C	T	CC	CT	TT
	0.81	0.19	0.69 (242)	0.28(79)	0.07 (26)
SNP9	T	C	TT	CT	CC
	0.80	0.20	0.64 (241)	0.31 (117)	0.05(17)
SNP10	A	G	AA	AG	GG
	0.79	0.21	0.65(232)	0.29 (107)	0.06 (23)
SNP11	C	T	CC	CT	TT
	0.96	0.04	0.93(347)	0.07 (28)	0(0)
SNP12	T	C	TT	CT	CC
	0.92	0.08	0.86(323)	0.13 (50)	0.01 (4)
SNP13	T	C	TT	TC	CC
	0.47	0.53	0.25(92)	0.45 (167)	0.30 (112)
SNP15	C	T	CC	TC	TT
	0.73	0.27	0.56(202)	0.35 (127)	0.09 (33)
SNP16	T	C	TT	TC	CC
	0.59	0.41	0.36(132)	0.46 (170)	0.18 (67)

^*The wild-type allele was listed in the left.