Table 3.

Genetic diversity of the East Timor population and 24 surrounding populations using HVS-I

Population	Reference	n a	hts b	Unique hts	MPD c	RMP d
1 - East Timor (pooled)	[3], this study	362	94	52 (14%)	5.976 ± 2.857	0.039
1A - East Timor	this study	324	87	49 (15%)	5.938 ± 2.841	0.039
2 - Nusa Tenggara	[3,5,24,65]	1699	345	178 (10%)	5.816 ± 2.783	0.017
3 - Bali	[5,24]	570	138	71 (12%)	5.643 ± 2.711	0.034
4 - Java	[5,24]	97	49	31 (32%)	5.570 ± 2.698	0.035
5 - Sumatra	[5,17,40]	228	107	70 (31%)	5.520 ± 2.664	0.023
6 - Mentawai	[5]	128	16	4 (3%)	4.687 ± 2.311	0.126
7 - Nias	[5,41]	499	61	29 (6%)	4.766 ± 2.334	0.153
8 - Peninsular Malaysia*	[17,57]	470	158	98 (21%)	6.350 ± 3.016	0.029
9 - Borneo	[24]	157	102	77 (49%)	5.345 ± 2.593	0.017
10 - Sulawesi	[5,24]	437	153	108 (25%)	4.804 ± 2.351	0.039
11 - Moluccas	[24,65]	74	36	23 (31%)	5.425 ± 2.643	0.055
12 - Philippines	[24,28]	483	140	89 (18%)	5.052 ± 2.457	0.035
13 - Vietnam	[58]	187	119	91 (49%)	5.445 ± 2.634	0.018
14 - Laos	[59]	214	127	95 (44%)	5.689 ± 2.737	0.018
15 - Thailand	[60]	190	108	79 (42%)	5.584 ± 2.694	0.02
16 - South Korea	[61]	692	306	215 (31%)	4.853 ± 2.370	0.019
17 - Taiwan (indigenous)	[24,45]	718	86	35 (5%)	5.197 ± 2.518	0.042
18 - Hainan	[62]	293	99	45 (15%)	5.338 ± 2.583	0.025
19 - Mixed Han (China)	[63]	262	194	159 (61%)	5.533 ± 2.668	0.008
20 - West New Guinea	[66]	227	74	39 (17%)	7.045 ± 3.320	0.046
21 - Papua New Guinea	[34,64]	201	72	34 (17%)	6.733 ± 3.188	0.046
22 - Admiralty Islands	[67,68]	203	41	20 (10%)	5.693 ± 2.739	0.152
23 - Solomon Islands	[29]	703	102	41 (6%)	3.660 ± 1.855	0.208
24 - Polynesia	[65,67]	394	56	28 (7%)	1.793 ± 1.038	0.340
25 - Australia (indigenous)	[34,69]	146	50	22 (15%)	4.555 ± 2.252	0.042

*including Singapore.

^anumber of mtDNAs.

^bnumber of haplotypes.

^cmean number of pairwise differences.

^drandom match probability.

Reading frame: nps 16080–16180, 16195–16354; total sample size: n = 9,634. For geographic locations, see Figure 1.