Table 3.

Summary statistics for EST and de novo assembly

	Total	Brown	Orange
NO. of raw reads	1,416,522	610,701	805,821
Average length (bp)	282	257	301
% reads removed	16.62	25.51	11.05
NO. of reads after cleaning	1,181,060	454,933	716,797
Average length of cleaned reads (bp)	308	297	310
NO. of reads assembled as isotigs	1,070,902	NA	NA
NO. of isotigs	49,717	NA	NA
Average length of isotigs	580	NA	NA
Range of isotig lengths	50 - 7,102 bp	NA	NA
Isotigs above 200 bp	43,763	NA	NA
NO. of singletons	110,158	NA	NA
Average length of singletons	296	NA	NA
Range of singletons lengths	50 - 654 bp	NA	NA
Singletons above 200 bp	80,501	NA	NA
NO. of unique sequences a	159,875	NA	NA
NO. of unique sequences (left after CD-hit)	111,670	NA	NA
Unique sequences above 200 bases	87,120	NA	NA

^aThe total number of isotigs and singletons.