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Summary of simple sequence repeat (SSR) nucleotide classes among different nucleotide types found in C. nobilis sequences
| SSR type | No. of SSR- containing ESTs | NO. of SSRs | % of total SSRs |
|---|---|---|---|
| Di-nucleotides | 2,197 | 2,370 | 68.12 |
| Tri-nucleotides | 868 | 880 | 25.29 |
| Tetra-nucleotides | 202 | 202 | 5.81 |
| Penta-nucleotides | 18 | 18 | 0.52 |
| Hexa-nucleotides | 9 | 9 | 0.26 |
| Total | 3,294 | 3,479 | 100 |
Note: Both isotigs and singletons sequences are used to predict the SSR loci.
