Table 7.
Other cis- regulatory RNA motifs identified in B. methanolicus MGA3 and their respective transcriptional organization and function
| cis- regulatory RNA motif and its transcriptional organization | Related function | Locus tag(s) |
|---|---|---|
| (PyrR)*-pyrR-pyrP-pyrB-pyrC-pyrAA-pyrAB-pyrK-pyrD-pyrF-pyrE | Pyrimidine biosynthesis | BMMGA3_05780-BMMGA3_05825 |
| (pan)-panB-panC-panD | Biosynthesis of coenzyme A | BMMGA3_10610- BMMGA3_10620 |
| (yjdF)-yjdF | Unknown function | BMMGA3_03360 |
| (yybP-ykoY)(PyrR)-ykoY | Membrane protein | BMMGA3_14085 |
| (ylbH)§ | Unknown function | - |
*(PyrR) = PyrR binding site; (pan) = pan RNA motif; (yjdF) = yjdF RNA motif; yybP-ykoY = yybP-ykoY RNA motif; (ylbH) = ylbH RNA motif.
§A CDS for a conserved hypothetical protein is located on the opposite strand between the ylbH RNA motif and the next downstream gene.