Table 1.
Model ID | B1 | B2 | B3 | B4 | B5 | B6 |
---|---|---|---|---|---|---|
Model Ref | [25] | [23] | [24] | [26] | [27] | [29] |
Cell | S. cerevisiae | E. coli | E. coli | CHO | Generic | Drosophila |
melanogaster | ||||||
Description | Metabolic: | Metabolic: | Metabolic: CCM | Metabolic | Signal | Developmental |
level | genome scale | CCM | & transcription | transduction | GRN (spatial) | |
Parameters | 1759 | 116 | 178 | 117 | 86 | 37 |
Dynamic states | 276 | 18 | 47 | 34 | 26 | 108 –212 |
Observed states | 44 | 9 | 47 | 13 | 6 | 108 –212 |
Experiments | 1 | 1 | 1 | 1 | 10 | 1 |
Data points | 5280 | 110 | 7567 | 169 | 96 | 1804 |
Data type | simulated | measured | simulated | simulated | simulated | measured |
Noise level | σ=5% | real | no noise | variable | σ=5% | real |
Main features of the benchmark models. The standard deviation, σ, is given in those cases where artificial noise with constant variance was added to the data.