Table 2.

Annotation of TE superfamilies in the mulberry WGS assembly

Class	Order	Superfamily	Masked (bp)	Percentage of Masked (%)	Percentage of genome (%)
Retrotransposons	LTR	Copia	34 541 580	24.13	10.44
		Gypsy	30 419 960	21.25	9.20
		Lard	28 414 859	19.85	8.59
		Trim	2 005 679	1.40	0.61
		unclassified	46 818	0.03	0.01
	LINE	L1	388 544	0.27	0.12
		RTE	974 028	0.68	0.29
	SINE	tRNA	680	0.00	0.00
DNA transposons	TIR	PIF-Harbinger	6 270 533	4.38	1.90
		hAT	9 525 810	6.65	2.88
		CMC	7 834 412	5.47	2.37
		MuLE	1 273 395	0.89	0.38
		TcMar	256 524	0.18	0.08
		MITE	17 917 995	12.52	5.42
		unclassified	42 381	0.03	0.01
	Helitron	Helitron	3 258 215	2.28	0.98
Total			143 171 413	100.00	43.28