Table 4. RSP_3341 direct targets identified by ChIP-seq and expression profiling.
ID | Annotation | chrID | peakStart | peakStop | FC a | Expr b | |
---|---|---|---|---|---|---|---|
1 | RSP_1173 | Heat shock protein Hsp70 (dnaK) | chr1 | 2941200 | 2941599 | 4.4 | -2.7 |
2 | RSP_2945 | cytochrome c-type biogenesis protein CcmE (cycJ) | chr1 | 1626000 | 1626599 | 5.0 | -2.5 |
3 | RSP_4112–8* | Nitrate reductase (napEFDABC) | plasmidC | 79400 | 79799 | 5.1 | -6.3 |
* RSP_3341 targets also predicted in TRN
a Fold enrichment of RSP_RSP_3341-myc ChIP over control myc antibody ChIP in WT.
b Gene expression in WT w.r.t ΔRSP_3341.