Table 2.
Responsive transcription factors during the process of low temperature treatment in petunia seedlings.
| Family | Probe ID | 0.5 h/0 h | 2 h/0 h | 24 h/0 h | 5 d/0 h | Best hit in the protein database (blastx) | ||
|---|---|---|---|---|---|---|---|---|
| Accession | E-value | Annotation | ||||||
| AP2-EREBP | cn2811 | – | – | 2.38 | – | NP_200015 | 1.00E-17 | ERF025 (ethylene-responsive transcription factor) [Arabidopsis thaliana] |
| AP2-EREBP | cn4173 | – | – | −1.87 | −3.45 | NP_197901 | 8.00E-33 | ERF003 (ethylene-responsive transcription factor) [Arabidopsis thaliana] |
| AP2-EREBP | cn4335 | – | 1.34 | – | – | AAX20035 | 7.00E-66 | Ethylene responsive element binding protein C2 [Capsicum annuum] |
| AP2-EREBP | cn6160 | – | – | 3.32 | – | EEF33061 | 1.00E-21 | Ethylene-responsive transcription factor, putative [Ricinus communis] |
| AP2-EREBP | cn9604 | 1.21 | 2.56 | 1.88 | – | Q9LW49 | 1.00E-24 | ERF3(ethylene-responsive element binding factor)[Nicotiana sylvestris] |
| AP2-EREBP | DY395831_1 | – | 2.58 | 5.39 | – | BAF48804 | 8.00E-16 | Wound-responsive AP2 like factor 2 [Nicotiana tabacum] |
| AP2-EREBP | GO_dr001P0011E21_F_ab1 | – | – | −2.16 | −3.39 | AAU81956 | 2.00E-32 | ERF5 [Nicotiana tabacum] |
| AP2-EREBP | GO_dr001P0015C16_F_ab1 | – | 1.32 | 2.00 | 1.65 | Q9LW49 | 2.00E-40 | ERF3 (ethylene-responsive element binding factor) [Nicotiana sylvestris] |
| AP2-EREBP | GO_dr001P0017B08_F_ab1 | −3.12 | – | – | – | ABK96798 | 7.00E-24 | ERF3 (ethylene response factor 3) [Solanum tuberosum] |
| AP2-EREBP | GO_dr004P0008C18_F_ab1 | – | – | 2.42 | – | EEF46968 | 1.00E-27 | DNA binding protein, putative [Ricinus communis] |
| AP2-EREBP | GO_dr004P0029M08_F_ab1 | 3.58 | 6.66 | 5.53 | 4.35 | AAQ88400 | 6.00E-65 | CBF1B [Capsicum annuum] |
| AP2-EREBP | GO_drpoolB-CL6306Contig1 | – | – | 2.18 | 2.73 | AAU81956 | 8.00E-33 | ERF5 [Nicotiana tabacum] |
| AP2-EREBP | GO_drpoolB-CL6454Contig1 | – | 1.33 | – | – | AAO13360 | 1.00E-36 | DREB3(dehydration-responsive element binding protein 3)[Lycopersicon esculentum] |
| AP2-EREBP | GO_drpoolB-CL7405Contig1 | – | 1.33 | – | – | AAO13360 | 3.00E-17 | Dehydration-responsive element binding protein 3 [Lycopersicon esculentum] |
| AP2-EREBP | IP_PHBS008P03u | 3.18 | 6.23 | – | – | ABU84809 | 4.00E-15 | Putative dehydration-responsive element binding protein [Broussonetia papyrifera] |
| AUX/IAA | cn8979 | – | – | 4.41 | – | EEF44693 | 3.00E-49 | Auxin-responsive protein IAA1, putative [Ricinus communis] |
| GRAS | cn10124 | – | – | 2.09 | – | ABD72959 | 1.00E-118 | GRAS2 [Solanum lycopersicum] |
| GRAS | GO_drpoolB-CL9151Contig1 | – | – | −1.86 | – | ABJ51763 | 8.00E-51 | NSP1-like (nodulation signaling pathway 1-like protein)[Nicotiana benthamiana] |
| GRAS | GO_drs12P0009O19_F_ab1 | – | – | 2.12 | – | ABD72958 | 2.00E-90 | GRAS1 [Solanum lycopersicum] |
| GRAS | GO_drs12P0009O19_R_ab1 | – | – | 2.58 | – | ABD72958 | 1.00E-64 | GRAS1 [Solanum lycopersicum] |
| GRAS | GO_drs13P0003F13_R_ab1 | – | 1.38 | 3.03 | – | ACB30358 | 9.00E-34 | Putative scarecrow protein [Capsicum annuum] |
| HLH | cn3063 | – | – | −1.92 | −2.85 | ABX82930 | 5.00E-11 | transcription Factor style2.1 [Solanum lycopersicum] |
| HLH | EB174526_1 | – | – | −1.94 | – | EEF41534 | 6.00E-42 | DNA binding protein, putative [Ricinus communis] |
| HSF | DY396073_1 | – | – | 3.77 | 4.49 | AAM43804 | 9.00E-33 | HSFA9(heat stress transcription factor) [Helianthus annuus] |
| MADS-box | cn2934 | 1.64 | – | – | – | AAA68001 | 1.00E-123 | Agamous protein (Petunia inflata) |
| MADS-box | cn300 | 1.85 | – | – | – | Q40885 | 1.00E-116 | pMADS3 [Petunia x hybrida] |
| MADS-box | cn435 | 3.34 | – | – | 2.85 | Q07474 | 1.00E-116 | pMADS2 [Petunia x hybrida] |
| MADS-box | cn704 | 1.82 | – | – | – | Q07472 | 1.00E-113 | pMADS1 [Petunia x hybrida] |
| MADS-box | cn716 | 3.48 | – | – | 3.34 | Q03489 | 1.00E-126 | FBP2 (Floral-binding protein 2) [Petunia x hybrida] |
| MADS-box | cn748 | 1.85 | – | – | – | AAK21254 | 1.00E-125 | FBP23 [Petunia x hybrida] |
| MADS-box | cn80 | 4.48 | – | – | 3.43 | AAS46018 | 1.00E-114 | GLO1 [Petunia x hybrida] |
| MADS-box | GI_NP1240016 | – | −2.53 | −2.63 | – | AAK21253 | 1.00E-107 | FBP22 [Petunia x hybrida] |
| MADS-box | GI_NP1240120 | – | 1.46 | 2.27 | CAA57445 | 1.00E-124 | FBP11 [Petunia x hybrida] | |
| MYB | cn2063 | – | – | 2.59 | – | BAF96932 | 2.00E-58 | R2R3-MYB transcriptional factor [Gentiana triflora] |
| MYB | cn6894 | – | – | −2.69 | – | EEF48780 | 3.00E-70 | R2R3-myb transcription factor, putative [Ricinus communis] |
| MYB | cn8223 | – | – | 4.74 | 7.10 | ABY40371 | 4.00E-53 | MYB transcription factor [Solanum tuberosum] |
| MYB | GO_dr004P0032H09_F_ab1 | – | 1.38 | – | – | EEF47869 | 1.00E-42 | R2R3-myb transcription factor, putative [Ricinus communis] |
| MYB | GO_drpoolB-CL7385Contig1 | – | – | −2.18 | – | AAG08962 | 9.00E-98 | Tuber-specific and sucrose-responsive element binding factor [Solanum tuberosum] |
| MYB-related | cn5031 | – | – | 1.97 | – | CAB65169 | 4.00E-36 | I-box binding factor [Solanum lycopersicum] |
| MYB-related | GO_dr001P0009H07_F_ab1 | – | 2.83 | 4.05 | 4.54 | EEF32969 | 3.00E-84 | DNA binding protein, putative [Ricinus communis] |
| MYB-related | GO_dr004P0014N06_F_ab1 | – | – | −2.29 | −3.02 | BAE93149 | 3.00E-66 | methyl jasmonate induced MYB-related transcription factor [Nicotiana tabacum] |
| MYB-related | GO_dr004P0017J05_F_ab1 | – | – | −1.72 | – | BAA88222 | 1.00E-51 | LBM2 [Nicotiana tabacum] |
| NAC | cn3313 | – | – | 2.55 | – | AAM50520 | 0 | nam-like protein 17 [Petunia x hybrida] |
| NAC | cn3314 | – | – | −1.72 | – | AAM50518 | 1.00E-143 | nam-like protein 15 [Petunia x hybrida] |
| NAC | GI_NP1239993 | – | – | 1.98 | – | AAM34766 | 1.00E-177 | nam-like protein 3 [Petunia x hybrida] |
| NAC | GO_drpoolB-CL3154Contig1 | – | 2.35 | 5.47 | 5.90 | EEF28468 | 6.00E-20 | NAC domain-containing protein, putative [Ricinus communis] |
| NAC | SG_SGN-U211561 | – | – | 2.39 | – | EEF32064 | 9.00E-14 | NAC domain-containing protein, putative [Ricinus communis] |
| SBP-box | cn10022 | – | – | 2.32 | – | EEF50305 | 7.00E-48 | LIGULELESS1 protein, putative [Ricinus communis] |
| SBP-box | cn8031 | – | – | 2.57 | – | EEF50305 | 9.00E-11 | LIGULELESS1 protein, putative [Ricinus communis] |
| TCP | EB174538_1 | – | −1.88 | – | – | ABW08044 | 4.00E-26 | Eukaryotic transcription factor [Conandron ramondioides] |
| Zinc finger protein (C2H2-type) | cn3341 | – | – | 4.07 | 3.86 | BAA21925 | 1.00E-91 | ZPT2-8 [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | cn3342 | – | – | 3.76 | 3.64 | BAA21924 | 7.00E-68 | ZPT2-7 [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | cn3346 | 1.84 | 4.31 | 4.44 | 3.31 | BAA21921 | 3.00E-77 | ZPT2-12 [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | cn762 | – | – | 2.09 | – | BAA05077 | 3.00E-85 | Zinc-finger DNA binding protein [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | GI_NP1240035 | 1.62 | 3.03 | 6.31 | 4.41 | BAA21926 | 1.00E-86 | ZPT2-9 [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | GI_NP1240041 | – | 1.29 | – | – | BAA21920 | 1.00E-131 | ZPT2-11 [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | GI_NP1240214 | – | – | 2.81 | – | BAA05078 | 1.00E-115 | Zinc-finger DNA binding protein [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | GI_NP1240263 | – | 1.28 | – | – | CAA43111 | 1.00E-143 | DNA-binding protein [Petunia x hybrida] |
| Zinc finger protein (C2H2-type) | GO_drpoolBCL3762Contig1 | 2.53 | 3.68 | 2.73 | 1.02 | BAA05079 | 4.00E-35 | zinc-finger protein [Petunia x hybrida] |
| Zinc finger protein(C3H-type) | GO_drs31P0004P18_R_ab1 | – | 2.19 | 2.63 | 1.54 | EEF34053 | 9.00E-34 | Transcription factor, putative [Ricinus communis] |
| Zinc finger protein (B-box-type) | GO_drs21P0009P06_F_ab1 | – | – | 1.91 | 3.70 | EEF37806 | 2.00E-38 | Transcription factor, putative [Ricinus communis] |
All data are shown log2 Ratio, and positive and negative values of Log2 Ratio are either up- or down-regulated genes in the four pair-comparisons. No significant fold changes are indicated as “–.” One probe ID showing in bold font indicates the gene PhZFP1.