Table 1.
Deep-Sequencing Read Data
| Data | Read Count | Total Reads | Nonhuman Reads |
|---|---|---|---|
| Raw data | 20 588 062 | 100% | |
| Quality control passed data | 18 877 676 | 91.69% | |
| Nonhuman data | 77 915 | 0.38% | |
| PhiX control | 61 758 | 0.3% | 79% |
| Astrovirus | 46 | 0.0002% | 0.06% |
| Environmental bacteriaa | 470 | 0.002% | 0.6% |
| Unidentified | 15 377 | 0.07% | 20% |
| Humanb | 264 | 0.001% | 0.3% |
aSphingobium yanoikuyae, Afipia broomeae, Roseomonas cervicalis, Massilia timonae, Achromobacter piechaudii, Acinetobacter species, Serratia odorifera, Citrobacter youngae, Escherichia coli, Propionibacterium acnes, Sphingobacterium spiritivorum, Streptococcus mitis.
bReads that were not filtered out at the nucleotide level (BLASTn) but identified at the amino acid level (BLASTx).