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. Author manuscript; available in PMC: 2015 Mar 3.
Published in final edited form as: Bioorg Med Chem. 2013 Apr 6;21(15):4730–4743. doi: 10.1016/j.bmc.2013.03.082

Discovery of benzamide analogs as negative allosteric modulators of human neuronal nicotinic receptors: Pharmacophore modeling and structure-activity relationship studies

Bitna Yi a,, Sihui Long b,, Tatiana F González-Cestari a, Brandon J Henderson a,, Ryan E Pavlovicz c, Karl Werbovetz b, Chenglong Li b,c, Dennis B McKay a,*
PMCID: PMC4347880  NIHMSID: NIHMS665350  PMID: 23757208

Abstract

The present study describes our ongoing efforts toward the discovery of drugs that selectively target nAChR subtypes. We exploited knowledge on nAChR ligands and their binding site that were previously identified by our laboratory through virtual screenings and identified benzamide analogs as a novel chemical class of neuronal nicotinic receptor (nAChR) ligands. The lead molecule, compound 1 (4-(allyloxy)-N-(6-methylpyridin-2-yl)benzamide) inhibits nAChR activity with an IC50 value of 6.0 (3.4–10.6) µM on human α4β2 nAChRs with a ~5-fold preference against human α3β4 nAChRs. Twenty-six analogs of compound 1 were also either synthesized or purchased for structure-activity relationship (SAR) studies and provided information relating the chemical/structural properties of the molecules to their ability to inhibit nAChR activity. The discovery of subtype-selective ligands of nAChRs described here should contribute significantly to our understanding of the involvement of specific nAChR subtypes in normal and pathophysiological states.

Keywords: Neuronal nicotinic receptors, Negative allosteric modulators, Structure-activity relationship studies, Pharmacophore modeling

1. Introduction

Neuronal nicotinic acetylcholine receptors (nAChRs) are ligand-gated ion channels that mediate the physiological effects elicited by the endogenous neurotransmitter, acetylcholine (ACh). nAChR signaling influences and regulates a number of physiologically important processes (e.g., cognition, arousal, anxiety, pain processing, food intake, and reward).1,2 Furthermore, disruption or alteration of nAChR activity has been implicated in many diseases and disorders (Alzheimer’s disease, Parkinson’s disease, depression, schizophrenia, and addiction).3 Therefore, nAChRs hold considerable promise as therapeutic targets.

A major challenge in the study of the nAChRs is the diversity and complexity of these pentameric receptors. There are eleven human genes that encode nAChR subunits (α2–α10 excluding α8 and β2-β4). These subunits assemble to form multiple subtypes that are characterized by distinct biochemical properties (e.g., ion selectivity, conductance, mean channel open time, permeability to Ca2+, and desensitization rate).46 Importantly, each subunit is expressed in unique spatial and developmental patterns, suggesting the possibility that individual subtypes may play distinct roles in certain physiological processes.6,7 Knowledge of these roles will pave the way toward the identification of novel therapeutic targets and allow the development of more targeted pharmacotherapy with reduced side effects. Therefore, drugs that specifically target nAChR subtypes can represent valuable research tools by providing insight into the roles that different nAChR subtypes play in physiological and pathological states.

Orthosteric binding sites of nAChRs (sites of ACh binding) contain a high level of sequence homology. At the interface between α and β subunits, ACh interacts with the ‘aromatic nest’, which is a group of five aromatic amino acid residues (i.e., Trp56, Trp61, Trp87, Trp150, and Tyr199). (The numbers used in this manuscript are based on the first transcribed protein). These residues are completely conserved in all nAChR subunits.18 In addition, amino acid residues surrounding the orthosteric site (Cys 193, Cys 194, and Tyr 94) are also completely conserved or highly conserved (75–100% amino acid identity across nAChR subunits). We believe that this extensive level of sequence homology makes it difficult to discover and develop drugs that interact with the orthosteric binding site and pharmacologically discriminate one subtype from others. Our laboratory is addressing the issue of subtype-selectivity by targeting ‘non-orthosteric’ sites of nAChRs previously identified by our laboratory (e.g., allosteric sites).16 Our hypotheses are that (1) structural variations within allosteric binding sites can provide a foundation to develop subtype-selective ligands of nAChRs and (2) a multidisciplinary approach can direct the design and synthesis of new molecules with optimized properties (i.e., selectivity and potency). The present study is a proof-of-concept study to document the utilization of allosteric binding sites to develop drugs with specificity for nAChR subtypes using a combination of multiple approaches. In particular, we focused on the subtype-selectivity for human α4β2 (hα4β2) nAChRs over human α3β4 (hα3β4) nAChRs. As one of the main subtypes expressed in the central nervous system (CNS), hα4β2 nAChRs have been implicated in various brain diseases and disorders (e.g., nicotine addiction, anxiety, and depression).812 On the other hand, hα3β4 nAChR is largely expressed in the peripheral autonomic ganglia where it modulates the release of multiple neurotransmitters. Due to the roles of hα3β4 nAChR in the autonomic ganglia, activity of nicotinic drugs on this subtype has been postulated to mediate a wide range of autonomic side effects, as exemplified by those reported from usage of the classical autonomic blocker, mecamylamine (e.g., constipation, urinary retention, dilation of the pupils, and postural hypotension).13 Therefore, with interest in developing safer drugs for CNS application, subtype-selectivity was pursued for the hα4β2 nAChRs over the hα3β4 nAChRs.

In this study, we report the discovery of a novel chemical class of nAChR antagonists that allosterically modulate receptor activity using multiple approaches. As a rational drug design strategy, we utilized knowledge gained from our previous studies1318 by incorporating ligand-based modeling, structure-based modeling, pharmacology, and medicinal chemistry. Previously, our laboratory has identified several classes of novel negative allosteric modulators (NAMs) of nAChRs.1316 Effects of those NAMs were insurmountable with increasing concentrations of the orthosteric agonist, epibatidine, suggesting their non-competitive mechanisms of action. Importantly, some of these NAMs showed selectivity for hα4β2 nAChRs over hα3β4 nAChRs. Utilizing a combination of homology modeling, blind docking, and site-directed mutagenesis, an allosteric binding site where these NAMs bind was also identified.1618 This site is located approximately 10 Å from the orthosteric site at the interface between α and β subunits. Since major amino acid residues comprising this site are located at the β subunit, we named this site the ‘β subunit site’. The ‘β subunit site’ is sequentially and structurally diverse among subtypes, which provides an explanation for the relative subtype-selectivity shown with some of the NAMs17: among residues positioned within the ‘β subunit site’, Thr58, Serl33, Serl38, Serl42, Phell8, and Serl37 showed reduced sequence conservation (less than 26% amino acid identity across nAChR subunits). Other amino acids (Glu60 and Ser97) that contribute to interactions between ligands and receptors occurring through the ‘β subunit site’ also share a limited degree of sequence conservation among subunits (amino acid identity of 63% and 39%, respectively).17 The diversity within the ‘β subunit site’ and the identification of subtype-selective NAMs acting on this site provide support for our approach of targeting allosteric binding sites to develop selective nAChR antagonists. In this study, the physicochemical properties of NAMs that selectively target hα4β2 nAChRs as well as the biochemical characteristics of their binding sites (i.e., the ‘β subunit site’) mentioned above were exploited. Utilization of ligand-based and structure-based approaches using the previously obtained knowledge led to the discovery of a lead compound of this study (i.e., Compound 1, (4-(allyloxy)-N-(6-methylpyridin-2-yl)benzamide) that acts as a NAM of nAChRs. Furthermore, 26 analogs of compound 1 were either synthesized or purchased to determine the structural features that are relevant for potency and relative selectivity toward nAChRs.

2. Chemistry

Target compounds 8–15 were obtained through reaction between commercially available 6-substituted-2-aminopyridines 6a–e with 4-propoxybenzoyl chloride (7a) or 4-allyloxybenzoyl chloride (7b) as shown in Scheme 1. Benzoyl chlorides 7a,b were readily prepared by heating 4-propoxybenzoic acid or 4-allyloxybenzoic acid to reflux in thionyl chloride.19 4-Allyloxybenzoic acid (18) was made through the reaction between 4-hydroxybenzoic acid (16) and allyl bromide. Since ester 17 was also formed as an undesired side product of the reaction above, 17 was converted to the desired acid 18 by treatment with NaOH in ethanol/water (Scheme 2).

Scheme 1.

Scheme 1

Reagents: (a) DCM, Et3N.

Scheme 2.

Scheme 2

Reagents: (a) NaOH, allyl bromide, H2O; (b) NaOH, EtOH/H2O; (c) thionyl chloride.

Target compounds 19–30 were synthesized in high yield by reacting a variety of aliphatic and aromatic amines with bromopyridine 12 through Buchwald-Hartwig animation20 (Scheme 3). In contrast, Buchwald-Hartwig reactions using chloropyridine 10 failed to give the desired products. Also, Buchwald-Hartwig coupling using compound 9 as a precursor in an attempt to produce compounds 34 and 35 was unsuccessful, likely due to the presence of the allyl group in 9. An alternative route was thus required to synthesize target compounds 34 and 35. 2-Amino-6-bromopyridine (6b) was first protected by acylation to provide 31, followed by Buchwald-Hartwig amination with either propylamine or butylamine to yield protected alkylaminopyridines 32 and 33, respectively. The acetyl group was removed by treatment with sodium hydroxide, followed by acylation of the resulting primary aromatic amines with 7b to afford target compounds 34 and 35 (Scheme 4).

Scheme 3.

Scheme 3

Reagents: (a) aliphatic or aromatic amine, Pd2(dba)3, (rac)-BINAP, NaO-t-Bu, toluene.

Scheme 4.

Scheme 4

Reagents: (a) acetyl chloride, DCM, Et3N; (b) Pd2(dba)3, (rac)-BINAP, NaOH-t-Bu, toluene, propylamine or butylamine; (c) NaOH, H2O; (d) 7b, DCM,Et3N.

3. Results

3.1. Pharmacophore and ligand-based virtual screening

In order to identify novel chemical entities that exhibit subtype-selectivity, information obtained from our previous studies was utilized.1318 Four NAMs (i.e., KAB-18, DDR-5, DDR-13, and DDR-18) previously identified by our laboratory16 were selected based on their preference for hα4β2 nAChRs against hα3β4 nAChRs and used here to generate an initial pharmacophore (Fig. 1). In parallel, structure-based virtual screening (SBVS) using the allosteric binding sites for these four NAMs (i.e., β subunit site) was performed and led to the identification of four novel scaffolds that inhibit the activity of nAChRs with relative selectivity for hα4β2 nAChRs.14 Among top hits from this SBVS, Hit 2 ((5-amino-N-(6-methylpyridin-2-yl)-2-(piperidin-l-yl)benzamide) shares structural similarities with the four NAMs used to generate the initial pharmacophore (Fig. 1). In addition, Hit 2 has lower molecular weight by lacking the substitutions linked to the piperidine ring and thereby possesses potential to exhibit improved bioavailability (Fig. 1). As Hit 2 shows a preference for hα4β2 nAChRs, shares structural similarity with the four NAMs used for initial pharmacophore development, and possesses more desirable drug properties with regard to in vivo bioavailability, the initial pharmacophore was then refined here using Hit 2 from the SBVS. The refined pharmacophore reported here features three hydrophobic regions (HYD1, HYD2, and HYD3) and one hydrogen bond acceptor (HBA) (Fig. 2). This refined pharmacophore model was utilized for ligand-based virtual screening (LBVS) as described below.

Figure 1.

Figure 1

Structures of the compounds used for pharmacophore generation.

Figure 2.

Figure 2

Proposed pharmacophore describing features of subtype selective NAMs of nAChRs. The features of the pharmacophore model generated using GASP are illustrated. Three hydrophobic (HYD1, HYD2, and HYD3) and a hydrogen bonding acceptor (HBA1) feature of the pharmacophore are marked. This pharmacophore was developed as described in the Section 6.

3.2. Lead compounds

Chembridge’s CNS diversity set of small molecules (~10,000) was virtually screened using the refined pharmacophore (Fig. 2) with 220 hits being identified. The hits were ranked based on a query fit (QFIT) score and pharmacological activity of the top 10 hits was evaluated as described in the Section 6 using HEK tsA201 cells stably expressing either hα4β2 nAChRs or hα3β4 nAC-hRs (data not shown). One of the top ranked hits from this LBVS (4-(allyloxy)-N-(6-methylpyridin-2-yl)benzamide, 1) is the focus of this study. As a lead molecule, compound 1 inhibited the activity of hα4β2 nAChRs with an IC50 value of 6.0 (3.4–10.6) µM with ~5-fold preference against hα3β4 nAChRs (Fig. 3A and B; Table 1). On the other hand, compound 8 (4-(6-methylpyridin-2-yl)-4-propoxybenzamide), in which the propene moiety in the alkoxy portion of compound 1 was replaced with the propane moiety, showed no preference for either subtype; compound 8 produced antagonistic activity on both hα4β2 and hα3β4 nAChRs with IC50 values of 9.5 (3.7–24.1) µM and 11.1 (8.2–15.2) µM, respectively (Fig. 3A and C; Table 1). Based on their potency and/or selectivity, compounds 1 and 8 were selected as lead molecules and structural modifications were made at the pyridyl or alkoxy portions of these compounds as outlined in the chemistry section (Fig. 3A). Analyses of structure activity relationship (SAR) studies with 25 analogs of these lead compounds were then performed to determine how modifications are related to the compounds’ activity on nAChRs. None of the compounds reported here exhibited agonist activity on either hα4β2 or hα3β4 nAChRs (Data not shown). With regard to their mechanisms of action, effects of compounds 1 and 8 were not surmountable with increasing concentrations of epibatidine but led to a decrease in the maximum effect of epibatidine (Fig. 4). This suggested that compounds 1 and 8 are not competing with epibatidine for the orthosteric binding site but instead act as non-competitive antagonists of nAChRs.

Figure 3.

Figure 3

Concentration-response effects of compounds 1 and 8 on hα4β2 nAChRs and hα3β4 nAChRs. (A) Structure of lead compounds 1 and 8 with the location of the primary substitutions for SAR studies. The concentration-response effects of compound 1 (B) and 8 (C) were investigated on hα4β2 nAChRs (▪) and hα3β4 nAChRs (□) as described in the Section 6. Values represent means ± SEMs (n = 4–7). Data are reported as a percentage of peak fluorescence responses for 1 µM epibatidine. IC50 values of compounds 1 and 8 are reported in Table 1.

Table 1.

SAR studies on the alkoxy portion of Compound 1

Compound hα4β2 nAChRs
hα3β4 nAChRs
Selectivityc
IC50 valuea (µM) nhb IC50 valuea (µM) nhb
graphic file with name nihms665350t1.jpg 6.0 (3.4–10.6) −0.7 31.7 (22.8–44.0) −1.1 5.3
graphic file with name nihms665350t2.jpg 9.5 (3.7–24.1) −1.6 11.1 (8.2–15.2) −1.5 1.2
graphic file with name nihms665350t3.jpg 19.6 (16.1–23.9) −1.0 24.7 (17.8–33.9) −1.5 1.3
graphic file with name nihms665350t4.jpg 19.4 (15.7–24.0) −1.1 21.7 (15.3–31.0) −1.6 1.1
graphic file with name nihms665350t5.jpg 17.1 (11.2–26.0) −0.9 17.4 (14.9–20.4) −0.8 1.0
a

Values represent geometric means (confidence limits), n = 5–10.

b

nh, Hill coefficient.

c

Selectivity; fold ratio of IC50-h3α4β nAChRs/IC50-hα4β2 nAChRs.

Figure 4.

Figure 4

Concentration-response effects of epibatidine in the absence and presence of compounds 1 and 8. The concentration–response effects of epibatidine were investigated in the absence (□) and the presence (▪) of compounds 1 (A) and 8 (B) on human α4β2 nAChRs, using calcium accumulation assays described in the Section 6. Values represent means ± SEM (n = 4).

3.3. Analyses of SAR studies on analogs of compound 1

In the first series of SAR studies, chemical modifications were made primarily to the alkoxy portion of the lead molecule, compound 1, to determine functional effects of those structural changes. Concerning modifications in the alkoxy portion of compound 1, replacement of the propene group with propane moiety (compound 8) resulted in an increase in potency on hα3β4 nAChRs with no change in potency on hα4β2 nAChRs; thus, this modification led to loss of relative selectivity for hα4β2 nAChRs (Table 1). Introduction of a methyl moiety (compound 2) and replacement of the propene with a propyne (compound 3) induced changes in functional activity on nAChR in a subtype-specific manner. While those changes led to decreases in potency on hα4β2 nAChRs, the same changes resulted in a trend to increased potency on hα3β4 nAChRs. However, the increases in potency were not statistically significant (compound 1 vs 2, p = 0.261; compound 1 vs 3, p = 0.143). Compound 4 had structural modifications on both the pyridyl and alkoxy portions of compound 1; a methyl group was introduced to the methylpyridine in the pyridyl portion and the propene moiety in the alkoxy portion was replaced by an ethyl residue. These modifications led to a decrease in potency on hα4αβ2 nAChRs, whereas they caused an increase in potency on hα3β4 nAChRs. Overall, these structural changes decreased the selectivity ratio and compound 4 inhibited the activity of hα4β2 and hα3β4 nAChRs with comparable potency. The pyridyl portion of compound 1 was also modified using several different substitutions and functional effects of those changes were investigated (Table 2). Replacement of 2-methylpyridine with pyridine (compound 5) caused decreases in potency for both hα4β2 and hα3βp4 nAChRs. Compound 5 still maintained relative selectivity for hα4β2, although the selectivity ratio decreased to ~3-fold. The introduction of halogen atoms (e.g., chlorine and bromine) led to decreases in potency on both hα4β2 and hα3β4 nAChRs. Bromine addition (compound 9) resulted in ~11-fold and ~2-fold decreases in potency on hα4β2 and hα3β4 nAChRs, respectively, while the chlorinated analog 10 showed no activity up to 100 µM on both subtypes. Replacement of 2-methylpyridine with 2-ethylpyridine (compound 11) led to a decrease in potency on hα4β2 nAChRs. However, potency on hα3β4 nAChRs was not affected by this substitution, leading to a decrease in the selectivity ratio. On the other hand, replacement of 2-methylpyridine with N-propylpyridin-2-amine (compound 34) or N-butylpyridin-2-amine (compound 35) resulted in decreases in potency on hα4β2 nAChRs and slight increases in potency on hα3β4 nAChRs.

Table 2.

SAR studies on the pyridyl portion of Compound 1

Compound hα4β2 nAChRs
hα3β4 nAChRs
Selectivityc
IC50 valuea (µM) nhb IC50 valuea (µM) nhb
graphic file with name nihms665350t6.jpg 6.0 (3.4–10.6) −0.7 31.7 (22.8–44.0) −1.1 5.3
graphic file with name nihms665350t7.jpg 19.3 (14.5–25.7) −1.0 61.4 (40.6–92.8) −1.3 3.2
graphic file with name nihms665350t8.jpg 70.1 (53.9–91.2) −1.1 65.5 (54.4–78.9) −0.9 0.9
graphic file with name nihms665350t9.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t10.jpg 20.5 (15.5–27.3) −1.3 27.4 (14.6–51.2) −0.9 1.3
graphic file with name nihms665350t11.jpg 14.8 (10.6–20.8) −2 11.7 (8.2–16.8) −2.1 0.8
graphic file with name nihms665350t12.jpg 22.4 (12.4–40.4) −1.6 19.2 (13.7–26.9) −1.7 0.9
a

Values represent geometric means (confidence limits), n = 5–10.

b

nh, Hill coefficient.

c

Selectivity; fold ratio of IC50-h3α4β nAChRs/IC50-hα4β2 nAChRs.

d

No activity up to 100 µM.

e

Could not be determined.

3.4. Analyses of SAR studies on analogs of compound 8

In the second series of SAR studies, compound 8 was used as the basis of comparison and functional effects of different substitutions on the pyridyl portion of compound 8 were explored (Table 3). Similar to the SAR studies on compound 1, introduction of halogen atoms to the pyridyl portion of compound 8 produced significant decreases in potency for both subtypes. Analogs with bromine or chlorine substitutions (compounds 12 and 13) either showed weak inhibitory activity (IC50 >50 µM) or no effects up to 100 µM on both subtypes. Replacement of 2-methylpyridine with pyrazine (compound 14) resulted in a ~3-fold decrease in potency on hα4β2 nAChRs and a ~2-fold decrease in potency on hα3β4 nAChRs. Substitution of 2-ethylpyridine at the pyridyl portion of compound 8 (compound 15) led to ~5-fold and ~2-fold decreases in potency on hα4β2 and hα3β4 nAChRs, respectively. Four analogs that have different alkylamine substitutions at the pyridine ring (compounds 19–22) provided insight into the functional effects of chain length on the pyridyl portion of compound 8. Analogs incorporating longer alkylamine side chains showed lower potency on both hα4β2 and hα3β4 nAChRs, suggesting inverse correlation between the chain length and potency. Introduction of structurally bulky groups to the pyridine ring led to loss of activity on both hα4β2 and hα3β4 nAChRs (compounds 23–30).

Table 3.

SAR studies on the pyridyl portion of Compound 8

Compound hα4β2 nAChRs
hα3β4 nAChRs
Selectivityc
IC50 valuea (µM) nhb IC50 valuea (µM) nhb
graphic file with name nihms665350t13.jpg 7.5 (3.6–15.5) −1.3 11.5 (8.0–15.2) −0.8 1.5
graphic file with name nihms665350t14.jpg 80.7 (49.3–132.0) −1.0 >100d ~e ~e
graphic file with name nihms665350t15.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t16.jpg 23.2 (16.4–32.6) −1.2 22.5 (12.0–42.0) −0.9 1.0
graphic file with name nihms665350t17.jpg 37.6 (22.6–62.7) −1.7 29.2 (27.1–31.5) −1.6 0.8
graphic file with name nihms665350t18.jpg 15.4 (10.5–22.6) −1.4 12.6 (6.4–24.6) −1.1 0.8
graphic file with name nihms665350t19.jpg 54.1 (24.7–118.0) −0.8 77.8 (42.2–143.0) −0.7 1.4
graphic file with name nihms665350t20.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t21.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t22.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t23.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t24.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t25.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t26.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t27.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t28.jpg >100d ~e >100d ~e ~e
graphic file with name nihms665350t29.jpg >100d ~e >100d ~e ~e
a

Values represent geometric means (confidence limits), n = 5–10.

b

nh, Hill coefficient.

c

Selectivity; fold ratio of IC50-h3α4β nAChRs/IC50-hα4β2 nAChRs.

d

No activity up to 100 µM.

e

Could not be determined.

4. Discussion

Computer aided drug discovery (CADD) has become an increasingly useful tool to facilitate many steps of the drug discovery process such as identifying hits, enabling de novo design of ligands, and modeling ADMET (absorption, distribution, metabolism, excretion, and toxicity) properties.2123 In particular, virtual screening (VS) has been widely used to guide lead identification by employing various statistical analyses and algorithms designed to search large chemical libraries in silico.24 Ligand-based virtual screening (LBVS) takes advantage of available information for known ligands such as structures, shape of individual fragments, and electrostatic properties; whereas SBVS exploits the knowledge of the structure of the target protein.25,26 In this study, a novel scaffold (compound 1) was identified through a virtual screening, using ligand-based and structure-based approaches. Previously, our laboratory identified NAMs (i.e., KAB-18, DDR-5, DDR-13, and DDR-18) that showed relative selectivity for hα4β2 nAChRs against hα3β4 nAChRs (Fig. 1).16 Furthermore, a combination of homology modeling, blind docking, and site-directed mutagenesis identified the ‘β subunit site’, a novel allosteric binding site on the receptor where these NAMs interact.1618 In contrast to the orthosteric binding site, the ‘β subunit site’ showed reduced sequence conservation. The ‘β sub-unit site’ was then used for SBVS with a hypothesis that its sequential and structural diversity could provide molecular foundations to develop selective nAChR drugs. Supporting this hypothesis, hits from this SBVS showed preference for hα4β2 nAChRs.14 Interestingly, one of the hits from the SBVS, (5-amino-N-(6-methylpyridin-2-yl)-2-(piperidin-l-yl)benzamide; Hit 2) shares the following structural features with the previously identified four subtype-selective NAMs (Fig. 1): (1) The carbonyl group is attached to the aryl ring and (2) the aryl ring has a six-membered ring at the ortho position. In order to identify a novel chemical scaffold with relative selectivity for hα4β2 nAChRs, the above mentioned information obtained from the previous studies was utilized. Initially, chemical and structural features of four subtype-selective NAMs (i.e., KAB-18, DDR-5, DDR-13, and DDR-18) were used to generate a pharmacophore. This initial pharmacophore was then refined using the structure of Hit 2, one of the hits from SBVS14, as it (1) shows relative selectivity for hα4β2 nAChRs over hα3β4 nAChRs, (2) displays structural similarity to the four NAMs used to develop the initial pharmacophore, and (3) has physicochemical properties associated with more desirable ADMET properties. The refined pharmacophore was subsequently applied to the LBVS and led to the identification of compound 1, a lead molecule of this study. In particular, with an aim of developing CNS applicable drugs, we performed the LBVS using the Chembridge’s CNS diversity set. Molecules contained in this library generally possess favorable physicochemical properties with regard to CNS bioavailability due to multiple strict sets of property filters. However, the strict criteria for drug-like properties result in the small-sized library with decreased molecular diversity. This might have limited the potential of identifying more potent and/or selective drugs, as well as chemical diversity of hit molecules.

In the present study, we used HEK tsA201 cells stably expressing hα4β2 or hα3β4 nAChRs for pharmacological evaluations of the analogs. As reported in our previous paper, pharmacological properties of classical agonists (epibatidine and nicotine) and antagonists (mecamylamine and d-tubocurarine) determined using these cells lines are in good agreement with previously reported values.16 In particular, the non-competitive nAChR antagonist mecamylamine showed inhibitory activity with IC50 values of 0.6 µM and 0.7 µM on hα4β2 nAChRs and hα3β4 nAChRs, respectively. The competitive antagonist d-tubocurarine displayed antagonist activity with IC50 values of 9.2 and 6.8 µM on hα4β2 nAChRs and hα3β4 nAChRs, respectively. Unlike these non-selective nAChR antagonsits, the lead molecule (compound 1) exhibited hα4β2 nAChR-selective antagonism. Compound 1 showed antagonistic activity with an IC50 value of 6.0 (3.4–10.6) µM on hα4β2 nAChRs with ~5-fold preference against hα3β4 nAChRs (Table 1). Its noncompetitive mechanism of action was described by a decrease in maximum effects of the orthosteric ligand epibatidine (Fig. 4A).

In order to determine effects of structural modifications to the pyridyl or alkoxy portions of the molecules with regard to their functional activities, analyses of the SAR studies on analogs of compounds 1 and 8 were performed. The most significant finding from the SAR studies of analogs of compound 1 is that modification of propene to propane (compound 1 vs compound 8) led to loss of preference for hα4β2, suggesting the importance of a double bond in the alkoxy portion of the molecules with regard to subtype-selectivity. Another analog containing the propene moiety (compound 5) also exhibited ~3-fold preference for hα4β2 nAChRs against hα3β4 nAChRs. However, relative selectivity for hα4β2 nAChRs was not observed for other analogs that also have the propene moiety (compounds 9–11, 34, and 35). Introduction of halogen atoms, an ethyl moiety, and alkyl amines (compounds 9–11, 34, and 35) to the pyridyl portion of the molecules abolished the subtype-selectivity. Comparison with their counterparts containing the propane moiety (compounds 12, 13, and 15) suggested that functional activities were mainly determined by the pyridyl portion of the molecules for this series of compounds and modification of propene to propane did not affect either potency or subtype-selectivity. Structural modifications to both the pyridyl and alkoxy portions of the molecules led to an analog (compound 4) that has comparable potency on hα4β2 and hα3β4 nAChRs. Collectively, these data suggest that both portions of the molecules contribute to the selectivity for hα4β2 nAChRs.

The SAR studies on analogs of compound 8 also provide insight into the functional effects of chemical modifications on the pyridyl portion of the molecules. With the aim of exploring the appropriate chain length linked to the pyridine ring, a series of compounds (compounds 8, and 19–22) were synthesized. SAR studies on these compounds suggested that steric hindrance exists at the portion of the receptor-binding pocket where the pyridine moiety interacts. Increasing the chain length resulted in decreases in potency for both subtypes. Similarly, substitutions with structurally bulky moieties to the pyridine ring (compounds 23–30) led to loss of activity on both subtypes.

5. Conclusion

For the past several years, our laboratory has focused on discovering small molecules that modulate nAChR activity with several chemical classes of ligands being reported.1318,2729 Here, we described the identification of a novel chemical class of NAMs of nAChRs through the application of multiple approaches. Iterative cycles of virtual screening using ligand-based and structure-based approaches led to the identification of the lead molecule, compound 1 (4-(allyloxy)-N-(6-methylpyridin-2-yl)benzamide). As the lead, compound 1 inhibits the activity of hα4β2 nAChRs with ~5-fold preference against hα3β4 nAChRs. To gain insight into the chemical/structural properties of the molecules pertaining to antagonistic activity on nAChRs, we have obtained 27 benzamide analogs and performed SAR studies on these analogs. It is notable that among the 27 analogs, two analogs (i.e., compounds 1 and 5) exhibit preference for hα4β2 nAChRs, although the selectivity ratios remain modest.

The study described here documents the successful utilization of a multifaceted approach for rational drug discovery employing computational modeling, pharmacology, and medicinal chemistry, which has led to the identification of a novel chemical class of nAChR NAMs including molecules that show relative selectivity for hα4β2 nAChRs. The discovery of subtype-selective NAMs of nAChRs described here should contribute significantly to our understanding of the involvement of specific nAChR subtypes in normal and pathophysiological states and may hold clinical promise for diseases linked to nAChRs.

6. Experimental

6.1. Materials

The calcium sensitive fluorescent probe, Calcium 5 NW dye, was obtained from Molecular Devices (Sunyvale, CA). Dulbecco’s Modified Eagle Medium (DMEM), penicillin, streptomycin and l-glutamine were purchased from Invitrogen Corporation (Grand Island, NY). The nAChR agonist, epibatidine was obtained from Sigma-Aldrich (St. Louis, MO). All other reagents were obtained from Fisher Scientific (Pittsburg, PA).

6.2. Pharmacophore generation

A pharmacophore model was generated using a procedure previously reported by our laboratory.16,30 The four NAMs (i.e. KAB-18, DDR-5, DDR-13, and DDR-18) that selectively target hα4β2 nAChRs were aligned using GASP (Genetic Algorithm Similarity Program, SYBYL 7.1) with default settings (population size, 125; the allele mutate weight, 96; the fitness increment, 0.02). Alignments for each set of molecules were repeated for 10 runs, followed by the optimal model selection through visual inspection. This initial pharmacophore model was then refined through observations of a novel chemical structure identified by SBVS.14 One of the hits from this SBVS contained three of the four hydrophobic pharmacophore elements. Therefore, a hydrophobic domain of the initial pharmacophore was eliminated using the ‘edit pharmacophore’ option in SYBYL 7.1.

6.3. Ligand-based virtual screening

Ligand-based virtual screening (LBVS) was performed with the above-mentioned pharmacophore. Chembridge’s CNS diversity set of small molecules (~10,000) was virtually explored with an aim of identifying molecules that contain chemical and geometrical descriptors defined by the pharmacophore model. The LBVS was performed with UNITY (SYBYL 7.1), using the default settings of FlexX (the 3D dynamic setting) search options. In order to maximize the diversity in molecular scaffolds, the LBVS was performed with Lipinski filter turned ‘off’. The hits were then scored in UNITY based on their ability to fit the spatial and chemical features described by the pharmacophore.

6.4. Calcium accumulation assay

For pharmacological evaluation of the synthesized analogs, calcium accumulation assay was performed with HEK tsA201 cells stably expressing either hα4β2 nAChRs or hα3β4 nAChRs (obtained from Professor Jon Lindstrom, University of Pennsylvania, Philadelphia, PA), using a procedure previously reported by our laboratory.13 Briefly, cells were plated 24 h prior to experiments in clear pre-coated 96-well culture plates. Plates were incubated at 37 °C in 5% CO2 in supplemented Dulbecco’s modified Eagle’s medium and cells were allowed to form a ~100% confluent monolayer (typically 24 h after plating). On the day of the experiment, cells were washed (100 µL) with HEPES-buffered Krebs (HBK) solution and incubated for 1 hour at room temperature with 50% Calcium 5 NW dye (Molecular Devices). The plates were then placed into a fluid handling integrated fluorescence plate reader (FlexStation II, Molecular Devices, Sunnyvale, CA) and treatment solutions were added to the cells. Changes in intracellular calcium levels were then simultaneously measured at excitation of 485 nm and emission of 525 nm from the bottom of the plate every 1.5 s. For each drug, six concentrations (0.1–100 µM) were used to generate full concentration-response curves and results are reported as the concentration of drugs that reduced the effect of the 1 µM epibatidine control by 50% (IC50 values). All compounds were initially dissolved with 100% DMSO (0.01 M stocks) and further dilutions were made in HEPES-buffered Krebs (HBK) solution (≤100 µM). The DMSO concentration at this compound concentration was less than 1% and had no effects on basal or agonist-induced increases in fluorescence intensity.16 Due to solubility problems, compound concentrations greater than 100 µM were not used in our concentration-response studies.

6.5. Calculations

Quantification of functional response was performed by determining the ability of compounds to inhibit the fluorescence signal increases in response to epibatidine (1 µM). Curve fitting was performed by Prism software (GraphPad, San Diego, CA) using the equation for a single-site sigmoidal dose–response curve with a variable slope. Functional data were calculated from the number of observations (n) performed in triplicate. IC50 values are expressed as geometric means (95% confidence limits) of each experiment. The Hill coefficients (nh) represented in the table were calculated by taking arithmetic mean of each Hill coefficient from individual experiments.

6.6. General procedure for the preparation of compounds

6.6.1. General experimental

1H NMR (300 MHz) and 13C NMR (75 MHz) spectra were recorded on a Bruker 300 UltraShield spectrometer. Electrospray ionization mass spectrometry (ESI-MS) was performed by The Ohio State University Mass Spectrometry and Proteomics Facility. Melting points were measured on a Fisher Scientific melting point apparatus and were not corrected. Gravity and flash column chromatography were performed using type 60A silica gel (60–230 mesh) from Fisher Scientific. Solid compounds were further purified by recrystallization. Elemental analyses, performed by Atlantic Microlabs, Norcross, GA, were carried out for all compounds prepared in our lab displaying an IC50 value of <50 µM as well as for other selected target compounds.

6.6.2. Materials

All chemicals and solvents were purchased from Aldrich Chemical Co., TCI, Alfa Aesar, Fisher Scientific, or Matrix Scientific and were used without further purification. Compounds 1–5 were purchased from Chembridge (San Diego, CA). These compounds were obtained at ≥90% purity as determined by 1H NMR analyses as stated by the supplier. Compounds prepared in our lab were characterized as free bases unless otherwise stated, but all were tested as hydrochloric acid salts in the bioassay to aid in solubilizing the compounds in the biological assay buffer.

6.6.3. Preparation and characterization of compounds

6.6.3.1. N-(6-Methylpyridin-2-yl)-4-propoxybenzamide (8)

A mixture of 2-amino-6-methylpyridine (6a) (0.61 g, 5.6 mmol) and triethylamine (4 mL) in dichloromethane (DCM) (10 mL) was added dropwise to freshly made 4-propoxybenzoyl chloride (7a) (1.19 g, 6.0 mmol) in DCM (5 mL) and the reaction mixture was heated to reflux overnight. After cooling, the mixture was washed with water, brine and dried with anhydrous MgSO4. The solvent was evaporated under reduced pressure, then the crude product was further purified on a silica gel column using hexanes/ethyl acetate (3:1) to yield the pure product (1.2 g, 79%) as a colorless solid, mp 86–89 °C 1H NMR (CDCl3, 300 MHz) δ 8.59 (s, 1H), 8.19 (d, J = 8.1 Hz, 1H), 7.89 (d, J = 8.4 Hz, 2H), 7.64 (dd, J = 7.8 Hz, 1H), 6.96 (d, J = 8.4 Hz, 2H), 6.91 (d, J = 7.5 Hz, 1H), 3.99 (t, J = 6.6 Hz, 2H), 2.46 (s, 3H), 1.85 (m, 2H), 1.06 (t, J = 7.2 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.2, 162.4, 156.8, 151.1, 138.7, 129.1, 126.3, 119.2, 114.4, 110.9, 69.7, 24.0, 22.5, 10.5; ESI-MS m/z 271.11 (M+H, 100); Anal. Calcd for C16H18N2O2 (270.14): C, 71.09; H, 6.71; N, 10.36. Found: C, 70.71; H, 6.78; N, 10.06.

6.6.3.2. 4-(Allyloxy)-N-(6-bromopyridin-2-yl)benzamide (9)

The reaction was similar to the one above employing 2-amino-6-bromopyridine (6b) (233 mg, 1.35 mmol) and 4-allyloxybenzoyl chloride (7b) (265 mg, 1.35 mmol) to yield 9 (367 mg, 82%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (4:1) to provide the pure compound as a colorless solid, mp 102–105 °C. 1H NMR (CDCl3, 300 MHz) δ 8.52 (s, 1H), 8.35 (d, J = 8.4 Hz, 1H), 7.88 (d, J = 8.7 Hz, 2H), 7.60 (dd, J = 8.1 Hz, 1H), 7.24 (d, J = 7.8 Hz, 1H), 7.00 (d, J = 9.0 Hz, 2H), 6.07 (m, 1H), 5.45 (d, J = 17.4 Hz, 1H), 5.34 (d, J = 10.5 Hz, 1H), 4.62 (d, J = 5.1 Hz, 2H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.1, 151.8, 140.7, 139.3, 132.4, 129.2, 125.9, 123.4, 118.3, 114.8, 112.4, 69.0; ESI-MS m/z 333.02 (M+H, 68).

6.6.3.3. 4-(Allyloxy)-N-(6-chloropyridin-2-yl)benzamide (10)

The reaction was similar to the one above employing 2-amino-6-chloropyridine (6c) (60 mg, 0.47 mmol) and 4-allyloxybenzoyl chloride (7b) (67 mg, 0.34 mmol) to yield 10 (85 mg, 87%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 98–100 °C 1H NMR (CDCl3, 300 MHz) δ 8.48 (s, 1H), 8.33 (d, J = 7.8 Hz, 1H), 7.89 (d, J = 9.0 Hz, 2H), 7.73 (dd, J = 7.8 Hz, 1H), 7.11 (d, J = 7.2 Hz, 1H), 7.02 (d, J = 8.7 Hz, 2H), 6.07 (m, 1H), 5.46 (d, J = 17.4 Hz, 1H), 5.35 (d, J = 10.5 Hz, 1H), 4.64 (d, J = 5.1 Hz, 2H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.1, 151.6, 149.0, 141.0, 132.4, 129.2, 125.9, 119.6, 118.3, 114.9, 112.1, 69.0; ESI-MS m/z 311.05 (M+Na, 100).

6.6.3.4. 4-(Allyloxy)-N-(6-ethylpyridin-2-yl)benzamide (11)

The reaction was similar to the one above employing 2-amino-6-ethylpyridine (6d) (70 mg, 0.57 mmol) and 4-allyloxybenzoyl chloride (7b) (112 mg, 0.57 mmol) to yield 11 (143 mg, 89%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 42–45 °C 1H NMR (CDCl3, 300 MHz) δ 8.61 (s, 1H), 8.19 (d, J = 8.1 Hz, 1H), 7.92 (d, J = 8.7 Hz, 2H), 7.67 (dd, J = 7.8 Hz, 1H), 6.99 (d, J = 8.7 Hz, 2H), 6.93 (d, J = 7.5 Hz, 1H), 6.07 (m, 1H), 5.44 (d, J = 17.4 Hz, 1H), 5.33 (d, J = 10.5 Hz, 1H), 4.61 (d, J = 5.4 Hz, 2H), 2.73 (q,J = 7.5 Hz, 2H), 1.29 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.1, 161.7, 151.0, 138.8, 132.6, 129.2, 126.7, 118.2, 117.9, 114.7, 111.2, 68.9, 31.0, 13.8; ESI-MS m/z 283.11 (M+H, 100); Anal. Calcd for C17H18N2O2 (282.14): C, 72.32; H, 6.43; N, 9.92. Found: C, 72.36; H, 6.47; N, 9.65.

6.6.3.5. N-(6-Bromopyridin-2-yl)-4-propoxybenzamide (12)

The reaction was similar to the one above employing 2-amino-6-bromopyridine (6b) (1.25 g, 7.2 mmol) and 4-propoxybenzoyl chloride (7a) (1.42 g, 7.2 mmol) to yield 12 (1.96 g, 81%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 128–132 °C 1H NMR (CDCl3, 300 MHz) δ 8.52 (s, 1H), 8.36 (d, J = 8.1 Hz, 1H), 7.88 (d, J = 8.7 Hz, 2H), 7.61 (dd, J = 8.1 Hz, 1H), 7.25 (d, J = 7.5 Hz, 1H), 7.00 (d, J = 8.7 Hz, 2H), 4.00 (t, J = 6.6 Hz, 2H), 1.86 (m, 2H), 1.07 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.7, 151.8, 140.7, 139.2, 129.2, 125.5, 123.4, 114.6, 112.4, 69.8, 22.5, 10.5; ESI-MS m/z 357.02 (M+Na, 100), 335.04 (M+H, 39).

6.6.3.6. N-(6-Chloropyridin-2-yl)-4-propoxybenzamide (13)

The reaction was similar to the one above employing 2-amino-6-chloropyridine (6c) (1.6 g, 12.5 mmol) and 4-propoxybenzoyl chloride (7a) (3.3 g, 16.7 mmol) to yield 13 (3.05 g, 84%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as colorless solid, mp 123–125 °C 1H NMR (CDCl3, 300 MHz) δ 8.48 (s, 1H), 8.33 (d, J = 8.1 Hz, 1H), 7.88 (d, J = 9.0 Hz, 2H), 7.72 (dd, J = 8.1 Hz, 1H), 7.10 (d, J = 7.8 Hz, 1H), 6.99 (d, J = 8.7 Hz, 2H), 4.01 (t, J = 6.6 Hz, 2H), 1.86 (m, 2H), 1.08 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.7, 151.6, 148.9, 141.0, 129.2, 125.5, 119.6, 114.6, 112.1, 69.8, 22.5, 10.5; ESI-MS m/z 313.06 (M+Na, 100).

6.6.3.7. 4-Propoxy-N-(pyrazin-2-yl)benzamide (14)

The reaction was similar to the one above employing 2-aminopyrazine (6e) (278 mg, 2.93 mmol) and 4-propoxybenzoyl chloride (7a) (582 mg, 2.93 mmol) to yield 14 (127 mg, 17%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 137–140 °C. 1H NMR (CDCl3, 300 MHz) δ 9.73 (s, 1H), 8.57 (br, 1H), 8.38 (d, J = 2.4 Hz, 1H), 8.27 (br, 1H), 7.92 (d, J = 8.8 Hz, 2H), 7.01 (d, J = 8.8 Hz, 2H), 4.02 (t, 7= 6.6 Hz, 2H), 1.87 (m, 2H), 1.08 (t, J = 7.2 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 164.9, 162.8, 148.5, 142.0, 140.1, 137.2, 129.4, 125.1, 114.7, 69.8, 22.5, 10.5; ESI-MS m/z 258.10 (M + H, 100); Anal. Calcd for C14H15N3O2 (257.12): C, 65.35; H, 5.88; N, 16.33. Found: C, 65.01; H, 5.90; N, 15.95.

6.6.3.8. N-(6-Ethylpyridin-2-yl)-4-propoxybenzamide (15)

The reaction was similar to the one above employing 2-amino-6-ethylpyridine (6d) (350 mg, 2.87 mmol) and 4-propoxybenzoyl chloride (7a) (483 mg, 2.43 mmol) to yield 15 (428 mg, 62%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as colorless solid, mp 59–62 °C. 1H NMR (CDCl3, 400 MHz) δ 8.56 (s, 1H), 8.19 (d, J = 8.2 Hz, 1H), 7.90 (d, J = 8.8 Hz, 2H), 7.66 (dd, J = 8.0 Hz, 2H), 6.96 (d, J = 8.8 Hz, 1H), 6.93 (d, J = 7.5 Hz, 1H), 3.98 (t, J = 6.5 Hz, 2H), 2.72 (q, J = 7.6 Hz, 2H), 1.85 (m, 2H), 1.28 (t, J = 7.6 Hz, 3H), 1.06 (t, J =7.4 Hz, 3H); 13C NMR (CDCl3, 100 MHz) δ 165.6, 162.7, 162.5, 151.5, 139.1, 129.5, 126.7, 118.2, 114.8, 111.5, 70.1, 31.4, 23.1, 14.2, 10.9; ESI-MS m/z 285.13 (M+H, 100); Anal. Calcd for C17H20N2O2 (284.12): C, 71.81; H, 7.09; N, 9.85. Found: C, 71.62; H, 7.40; N, 9.92.

6.6.3.9. Ally 4-(allyloxy)benzoate (17) and 4-(Allyloxy)benzoic acid (18)

Allyl bromide (2.5 g, 20.7 mmol) was added to 4-hydroxybenzoic acid (16) (700 mg, 5.07 mmol) and NaOH (452 mg, 11.3 mmol) in 20 mL 1:1 H2O/ethanol (v/v). The solution was heated to reflux overnight, and then solvent was removed under reduced pressure to yield the crude products. Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compounds 17 (570 mg) and 18 (305 mg) as colorless solids. Compound 17 (834 mg, 3.82 mmol) and NaOH (153 mg, 3.83 mmol) were dissolved in 10 mL 1:1 H2O/ethanol (v/v) and the solution was heated to reflux overnight. The solvent was removed under reduced pressure and the solid was dissolved in H2O and acidified. The aqueous solution was extracted with ethyl acetate (3 × 30 mL), and then the organic layer was combined and dried with anhydrous Na2SO4. Compound 18 was obtained and further purified by recrystallization in 1:1 hexanes/ethyl acetate (650 mg, 95%). Compound 17: 1H NMR (CDCl3, 300 MHz) δ 8.02 (d, J =8.1 Hz, 2H), 6.91 (d, J = 8.1 Hz, 2H), 6.01 (m, 2H), 5.40 (d, J = 17.1 Hz, 2H), 5.28 (m, 2H), 4.80 (d, J = 5.7 Hz, 2H), 4.53 (d, J = 4.8 Hz, 2H). Compound 18: 1H NMR (CDCl3, 300 MHz) δ 8.08 (d, J =8.8 Hz, 2H), 6.98 (d, J = 8.8 Hz, 2H), 6.08 (m, 1H), 5.45 (d, J = 17.1 Hz, 1H), 5.35 (d, J = 10.5 Hz, 1H), 4.64 (d, J = 5.1 Hz, 2H).

6.6.3.10. 4-Propoxy-N-(6-(propylamino)pyridin-2-yl)benzamide (19)

Compound 12 (212 mg, 0.63 mmol), propylamine (50 mg, 0.85 mmol), Pd2(dba)3 (42 mg, 0.045 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 62 mg, 0.10 mmol), NaO-t-Bu (320 mg, 3.29 mmol), and toluene (6 mL) were added to an oven-dried reaction vessel that was purged with argon for approximately 5 min. The reaction mixture was then heated to 70 °C under argon until compound 12 was consumed as determined by TLC. The reaction mixture was then allowed to cool to room temperature and ethyl acetate (10 mL) was added. The solid was removed by filtration and the filtrate was concentrated under reduced pressure to give the crude product. Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound (152 mg, 77%) as an off-white oil. 1H NMR (CDCl3, 300 MHz) δ 8.36 (s, 1H), 7.85 (d, 7 = 8.7 Hz, 2H), 7.62 (d, J = 7.8 Hz, 1H), 7.46 (dd, 7 = 7.8 Hz, 1H), 6.93 (d, J = 8.7 Hz, 2H), 6.16 (d, J = 8.1 Hz, 1H), 4.49 (t, J =4.8 Hz, 1H), 3.96 (t, J = 6.6 Hz, 2H), 3.18 (q, J = 6.3 Hz, 2H), 1.83 (m, 2H), 1.60 (m, 2H), 1.05 (t, J = 7.2 Hz, 3H), 0.97 (t, J =7.2 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.2, 157.8, 150.2, 139.7, 129.0, 126.6, 114.4, 102.2, 102.1, 69.7, 44.0, 22.8, 22.5, 11.6, 10.5; ESI-MS m/z 314.14 (M + H, 100); Anal. Calcd for C18H23N3O2 (313.18): C, 68.98; H, 7.40; N, 13.41. Found: C, 69.28; H, 7.79; N, 13.02.

6.6.3.11. 4-Propoxy-N-(6-(butylamino)pyridin-2-yl)benzamide (20)

The reaction was similar to the one used to prepare compound 19 with compound 12 (204 mg, 0.61 mmol), butylamine (63 mg, 0.86 mmol), Pd2(dba)3 (47 mg, 0.068 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 68 mg, 0.11 mmol), NaO-t-Bu (321 mg, 3.29 mmol), and toluene (6 mL) to yield 20 (155 mg, 78%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as an off-white oil. 1H NMR (CDCl3, 300 MHz) δ 8.19 (s, 1H), 7.87 (d, J = 8.4 Hz, 2H), 7.62 (d, J = 8.1 Hz, 1H), 7.50 (dd, J = 8.1 Hz, 1H), 6.97 (d, J = 8.7 Hz, 2H), 6.17 (d, J = 8.1 Hz, 1H), 4.37 (br, 1H), 3.99 (t, J = 6.3 Hz, 2H), 3.25 (q, J = 6.3 Hz, 2H), 1.85 (m, 2H), 1.61 (m, 2H), 1.44 (m, 2H), 1.07 (t, J = 7.5 Hz, 3H), 0.98 (t, J = 7.2 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.2, 157.8, 150.2, 139.8, 129.0, 126.6, 114.4, 102.1, 102.0, 69.7, 41.9, 31.7, 22.5, 20.2, 13.9, 10.5; ESI-MS m/z 328.16 (M+H, 100); Anal. Calcd for C19H25N3O2 (327.19): C, 69.70; H, 7.70; N, 12.83. Found: C, 70.32; H, 7.72; N, 12.56.

6.6.3.12. N-(6-(Pentylamino)pyridin-2-yl)-4-propoxybenzamide (21)

The reaction was similar to the one used to prepare compound 19 with compound 12 (203 mg, 0.61 mmol), amylamine (63 mg, 0.72 mmol), Pd2(dba)3 (46 mg, 0.049 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 65 mg, 0.10 mmol), NaO-t-Bu (325 mg, 3.3 mmol), and toluene (5 mL) to yield 21 (145 mg, 70%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as an off-white oil. 1H NMR (CDCl3, 300 MHz) δ 8.22 (s, 1H), 7.87 (d, J = 8.1 Hz, 2H), 7.62 (d, J = 7.8 Hz, 1H), 7.50 (dd, J = 8.1 Hz, 1H), 6.96 (d, J = 8.1 Hz, 2H), 6.17 (d, J = 8.1 Hz, 1H), 4.39 (br, 1H), 3.99 (t, J = 6.3 Hz, 2H), 3.24 (m, 2H), 1.85 (m, 2H), 1.62 (m, 2H), 1.38 (m, 4H), 1.07 (t, J = 7.2 Hz, 3H), 0.93 (m, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.2, 157.8, 150.2, 139.8, 129.0, 126.6, 114.4, 102.1, 102.0, 69.7, 42.2, 29.3, 29.2, 22.5, 14.0, 10.5; ESI-MS m\z 342.16 (M + H, 100).

6.6.3.13. N-(6-(Hexylamino)pyridin-2-yl)-4-propoxybenzamide (22)

The reaction was similar to the one used to prepare compound 19 with compound 12 (204 mg, 0.61 mmol), hexylamine (77 mg, 0.76 mmol), Pd2(dba)3 (43 mg, 0.045 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 61 mg, 0.10 mmol), NaO-t-Bu (325 mg, 3.3 mmol), and toluene (5 mL) to yield 22 (138 mg, 64%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as an off-white oil. 1H NMR (CDCl3, 300 MHz) δ 8.26 (s, 1H), 7.86 (d, J = 8.7 Hz, 2H), 7.62 (d, J = 7.8 Hz, 1H), 7.49 (dd, J = 8.1 Hz, 1H), 6.95 (d, J = 8.7 Hz, 2H), 6.16 (d, J = 8.1 Hz, 1H), 4.41 (br, 1H), 3.98 (t, J = 6.3 Hz, 2H), 3.22 (m, 2H), 1.85 (m, 2H), 1.59 (m, 2H), 1.35 (m, 6H), 1.06 (t, J = 7.2 Hz, 3H), 0.91 (t, J = 6.9 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.2, 157.8, 150.2, 139.8, 129.0, 126.6, 114.4, 102.1, 102.0, 69.7, 42.2, 31.6, 29.6, 26.7, 22.6, 22.5, 14.0, 10.5; ESI-MS m/z 356.18 (M+H, 100).

6.6.3.14. N-(6-(Phenylamino)pyridin-2-yl)-4-propoxybenzamide (23)

The reaction was similar to the one used to prepare compound 19 with compound 12 (112 mg, 0.33 mmol), aniline (100 mg, 1.08 mmol), Pd2(dba)3 (26 mg, 0.028 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 34 mg, 0.055 mmol), NaO-t-Bu (192 mg, 2.0 mmol), and toluene (6 mL) to yield 23 (115 mg, 99%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 112–115 °C. 1H NMR (CDCl3, 300 MHz) δ 8.49 (s, 1H), 7.83 (m, 3H), 7.55 (dd, J = 8.1 Hz, 1H), 7.32 (m, 4H), 7.05 (m, 1H), 6.93 (d, J = 8.7 Hz, 2H), 6.76 (s, 1H), 6.63 (d, J = 8.1 Hz, 1H), 3.97 (t, J = 6.6 Hz, 2H), 1.85 (m, 2H), 1.07 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.3, 162.3, 154.7, 150.4, 140.3, 140.1, 129.2, 129.1, 126.4, 122.8, 120.4, 114.4, 104.7, 104.3, 69.7, 22.5, 10.5; ESI-MS m/z 348.13 (M+H, 100).

6.6.3.15. N-(6-((2-Fluorophenyl)amino)pyridin-2-yl)-4-propoxyb-enzamide (24)

The reaction was similar to the one used to prepare compound 19 with compound 12 (120 mg, 0.36 mmol), 2-fluoroaniline (80 mg, 0.72 mmol), Pd2(dba)3 (25 mg, 0.027 mmol), 2,2’-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 37 mg, 0.06 mmol), NaO-t-Bu (190 mg, 1.95 mmol), and toluene (6 mL) to yield 24 (97 mg, 74%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 87–90 °C 1H NMR (CDCl3, 300 MHz) δ 8.29 (s, 1H), 7.98 (dd, J = 8.1 Hz, 1H), 7.88 (dd, J = 8.1 Hz, 3H), 7.61 (dd, J = 8.1 Hz, 1H), 7.14 (m, 2H), 7.01 (m, 3H), 6.60 (d, 1H), 6.50 (s, 1H), 4.01 (t, J = 6.3 Hz, 2H), 1.85 (m, 2H), 1.08 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.4, 153.8, 150.2, 140.1, 129.1, 126.4, 124.3, 124.2, 122.5, 122.4, 120.9, 115.5, 115.2, 114.5, 105.2, 69.8, 22.5, 10.5; ESI-MS m/z 366.12 (M+H, 100).

6.6.3.16. N-(6-((3-Fluorophenyl)amino)pyridin-2-yl)-4-propoxyb-enzamide (25)

The reaction was similar to the one used to prepare compound 19 with compound 12 (150 mg, 0.45 mmol), 3-fluoroaniline (90 mg, 0.81 mmol), Pd2(dba)3 (30 mg, 0.032 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 39 mg, 0.063 mmol), NaO-t-Bu (190 mg, 1.95 mmol), and toluene (5 mL) to yield 25 (147 mg, 90%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 108–110 °C 1H NMR (CDCl3, 300 MHz) δ 8.24 (s, 1H), 7.88 (m, 3H), 7.62 (dd, J = 8.1 Hz, 1H), 7.28 (m, 2H), 7.02 (m, 3H), 6.74 (m, 1H), 6.62 (d, J = 8.1 Hz, 1H), 6.44 (br, 1H), 4.02 (t, J = 6.6 Hz, 2H), 1.87 (m, 2H), 1.08 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.4, 161.8, 153.7, 150.3, 142.0, 140.2, 130.3, 129.1, 126.3, 114.8, 114.5, 109.1, 106.6, 106.3, 105.3, 69.8, 22.5, 10.5; ESI-MS m/z 366.09 (M + H, 100); Anal. Calcd for C21H20FN3O2 (365.40): C, 69.03; H, 5.52; N, 11.50. Found: C, 68.92; H, 5.48; N, 11.51.

6.6.3.17. N-(6-((4-Fluorophenyl)amino)pyridin-2-yl)-4-propoxybenzamide (26)

The reaction was similar to the one used to prepare 19 with compound 12 (114 mg, 0.34 mmol), 4-fluoroaniline (60 mg, 0.54 mol), Pd2(dba)3 (24 mg, 0.026 mmol), 2,2’-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 34 mg, 0.055 mmol), NaO-t-Bu (186 mg, 1.91 mmol), and toluene (5 mL) to yield 26 (86 mg, 69%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 135–138 °C. 1H NMR (CDCl3, 300 MHz) δ 8.21 (s, 1H), 7.82 (d, 2H), 7.78 (d, 1H), 7.55 (m, 1H), 7.28 (m, 2H), 7.05 (m, 4H), 6.52 (d, 1H), 6.25 (s, 1H), 4.02 (m, 2H), 1.86 (m, 2H), 1.11 (m, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.4, 154.9, 150.2, 140.2, 129.1, 126.3, 123.0, 122.9, 116.1, 115.8, 114.5, 104.5, 103.9, 69.8, 22.5, 10.5; ESI-MS m/z 366.07 (M+H, 100).

6.6.3.18. N-(6-((4-Chlorophenyl)amino)pyridin-2-yl)-4-propoxybenzamide (27)

The reaction was similar to the one used to prepare 19 with compound 12 (115 mg, 0.34 mmol), 4-chloroaniline (61 mg, 0.48 mol), Pd2(dba)3 (25 mg, 0.027 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 35 mg, 0.056 mmol), NaO-t-Bu (187 mg, 1.92 mmol), and toluene (5 mL) to yield 27 (76 mg, 58%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 143–146 °C. 1H NMR (CDCl3, 300 MHz) δ 8.30 (s, 1H), 7.84 (m, 3H), 7.58 (dd, J = 7.8 Hz, 1H), 7.29 (m, 4H), 6.97 (d, J = 9.0 Hz, 2H), 6.55 (d, J = 8.1 Hz, 1H), 6.50 (s, 1H), 4.00 (t, J = 6.6 Hz, 2H), 1.86 (m, 2H), 1.08 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.4, 154.1, 150.3, 140.2, 138.9, 129.2, 129.1, 127.5, 126.3, 121.3, 114.5, 105.0, 104.6, 69.8, 22.5, 10.5; ESI-MS m/z 382.09 (M + H, 100); Anal. Calcd for C21H20ClN3O2 (381.86): C, 66.05; H, 5.28; N, 11.00. Found: C, 66.09; H, 5.24; N, 11.07.

6.6.3.19. N-(6-((4-Methoxyphenyl)amino)pyridin-2-yl)-4-propoxybenzamide (28)

The reaction was similar to the one used to prepare 19 with compound 12 (118 mg, 0.35 mmol), 4-methoxyaniline (72 mg, 0.59 mol), Pd2(dba)3 (27 mg, 0.029 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 35 mg, 0.056 mmol), NaO-t-Bu (180 mg, 1.85 mmol), and toluene (6 mL) to yield 28 (107 mg, 80%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 103–105 °C. 1H NMR (CDCl3, 300 MHz) δ 8.26 (s, 1H), 7.87 (d, J = 9.0 Hz, 2H), 7.75 (d, J = 7.8 Hz, 1H), 7.53 (dd, J = 8.1 Hz, 1H), 7.25 (d, J = 8.7 Hz, 2H), 6.98 (d, J = 8.7 Hz, 2H), 6.92 (d, J = 9.0 Hz, 2H), 6.44 (d, J = 8.4 Hz, 1H), 6.26 (s, 1H), 4.01 (t, J = 6.6 Hz, 2H), 3.84 (s, 3H), 1.85 (m, 2H), 1.08 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.1, 162.3, 156.3, 155.9, 150.3, 140.1, 133.0, 129.1, 126.4, 124.1, 114.6, 114.4, 103.9, 103.2, 69.7, 55.5, 22.5, 10.5; ESI-MS m/z 378.15 (M+H, 81), 400.13 (M+Na, 100).

6.6.3.20. N-(6-(Benzylamino)pyridin-2-yl)-4-propoxybenzamide (29)

The reaction was similar to the one used to prepare 19 with compound 12 (113 mg, 0.34 mmol), benzylamine (70 mg, 0.65 mol), Pd2(dba)3 (24 mg, 0.026 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 38 mg, 0.06 mmol), NaO-t-Bu (190 mg, 1.95 mmol), and toluene (5 mL) to yield 29 (83 mg, 68%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 87–89 °C 1H NMR (CDCl3, 300 MHz) δ 8.33 (s, 1H), 7.86 (d, J = 8.7 Hz, 2H), 7.68 (d, J = 7.8 Hz, 1H), 7.48 (dd, J = 8.1 Hz, 1H), 7.35 (m, 4H), 7.30 (m, 1H), 6.95 (d, J = 9.0 Hz, 2H), 6.19 (d, J = 8.1 Hz, 1H), 4.87 (br, 1H), 4.50 (d, J = 6.0 Hz, 2H), 3.98 (t, J = 6.6 Hz, 2H), 1.85 (m, 2H), 1.08 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.2, 157.5, 150.2, 139.8, 139.3, 129.0, 128.7, 127.4, 127.3, 126.5, 114.4, 102.7, 102.6, 69.7, 46.1, 22.5, 10.5; ESI-MS m/z 362.13 (M+H, 100).

6.6.3.21. N-(6-(Piperidin-l-yl)pyridin-2-yl)-4-propoxybenzamide (30)

The reaction was similar to the one used to prepare 19 with compound 12 (161 mg, 0.48 mmol), piperidine (75 mg, 0.88 mol), Pd2(dba)3 (24 mg, 0.026 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 42 mg, 0.07 mmol), NaO-t-Bu (196 mg, 2.01 mmol), and toluene (5 mL) to yield 30 (106 mg, 65%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid, mp 89–92 °C 1H NMR (CDCl3, 300 MHz) δ 8.19 (s, 1H), 7.88 (d, J = 8.7 Hz, 2H), 7.61 (d, J = 7.5 Hz, 1H), 7.53 (dd, J = 7.8 Hz, 1H), 6.98 (d, J = 8.4 Hz, 2H), 6.42 (d, J = 8.1 Hz, 1H), 4.00 (t, J = 6.6 Hz, 2H), 3.52 (m, 4H), 1.86 (m, 2H), 1.66 (m, 6H), 1.08 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.0, 162.1, 158.4, 150.0, 139.7, 129.0, 126.7, 114.4, 102.7, 101.9, 69.7, 46.2, 25.5, 24.7, 22.5, 10.5; ESI-MS m/z 340.10 (M+H, 100); Anal. Calcd for C20H25N3O2 (339.43): C, 70.77; H, 7.42; N, 12.38. Found: C, 70.75; H, 7.37; N, 12.14.

6.6.3.22. N-(6-bromopyridin-2-yl)acetamide (31)

2-Amino-6-bromopyridine (6b) (730 mg, 4.22 mmol) and triethylamine (588 µL, 4.22 mmol) in 5 mL DCM was added to acetyl chloride (2 mL, 28 mmol) in DCM (5 mL). The solution was stirred overnight, then was washed with saturated NaHCO3, H2O, brine and dried with anhydrous Na2SO4. The crude product was obtained by removing the solvent under reduced pressure and further purified by recrystallization in ethyl acetate (860 mg, 95%). 1H NMR (CDCl3, 300 MHz) δ 8.17 (d, J = 8.1 Hz, 1H), 7.98 (br, 1H), 7.57 (dd, J = 7.8 Hz, 1H), 7.23 (d, J = 7.5 Hz, 1H), 2.22 (s, 3H).

6.6.3.23. N-(6-(propylamino)pyridin-2-yl)acetamide (32)

The reaction was similar to the one used to prepare 19 with compound 31 (455 mg, 2.12 mmol), propylamine (144 mg, 2.44 mmol), Pd2(dba)3 (129 mg, 0.14 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 195 mg, 0.31 mmol), NaO-t-Bu (1.07 g, 10.5 mmol), and toluene (5 mL) to yield 32 (215 mg, 53%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid. 1H NMR (CDCl3, 300 MHz) δ 8.23 (s, 1H), 7.43 (m, 2H), 6.13 (m, 1H), 4.48 (bs, 1H), 3.17 (m, 2H), 2.10 (s, 3H), 1.59 (m, 2H), 0.96 (t, J = 7.2 Hz, 3H).

6.6.3.24. N-(6-(butylamino)pyridin-2-yl)acetamide (33)

The reaction was similar to the one used to prepare 19 with compound 31 (400 mg, 1.86 mmol), butylamine (148 mg, 2.03 mmol), Pd2(dba)3 (127 mg, 0.14 mmol), 2,2′-bis(diphenylphosphino)-1,1′-binaphthyl (rac-BINAP, 179 mg, 0.28 mmol), NaO-t-Bu (1.0 g, 10.5 mmol), and toluene (5 mL) to yield 33 (207 mg, 54%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to provide the pure compound as a colorless solid. 1H NMR (CDCl3, 300 MHz) δ 8.05 (s, 1H), 7.43 (m, 2H), 6.13 (m, 1H), 4.41 (bs, 1H), 3.21 (m, 2H), 2.12 (s, 3H), 1.59 (m, 2H), 1.39 (m, 2H), 0.94 (t, J = 7.5 Hz, 3H).

6.6.3.25. 4-(Allyloxy)-N-(6-(propylamino)pyridin-2-yl)benzamide (34)

Compound 32 (165 mg, 0.85 mmol) and NaOH (90 mg, 2.25 mmol) were heated to reflux in 5 mL 1:1 H2O/ethanol (v:v) by the procedure used to hydrolyze ester 17 to yield pure N2-propylpyridine-2,6-diamine. N2-propylpyridine-2,6-diamine (85 mg, 0.56 mmol) and 4-allyloxybenzoyl chloride (7b, 77 mg, 0.39 mmol) were coupled using the procedure employed to prepare 8 to provide 34 (63 mg, 52%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to afford the pure compound as an off-white oil. It was further converted into its hydrochloric acid salt, mp 175–177°C. 1H NMR (CDCl3, 300 MHz) δ 15.08 (s, 1H), 11.34 (s, 1H), 8.24 (d, J = 8.7 Hz, 2H), 7.77 (d, J = 8.1 Hz, 1H), 7.68 (dd, J = 8.4 Hz, 1H), 7.22 (br, 1H), 6.99 (d, J = 8.7 Hz, 2H), 6.54 (d, J = 8.4 Hz, 1H), 6.04 (m, 1H), 5.43 (d, 1H), 5.22 (d, J = 9.6 Hz, 1H), 4.59 (d, J =5.4 Hz, 2H), 3.36 (m, 2H), 1.75 (m, 2H), 1.04 (t, J = 7.2 Hz, 3H); 13C NMR (CDCl3, 300 MHz) δ 166.0, 162.7, 151.3, 145.1, 132.4, 130.6, 124.2, 118.3, 114.8, 101.0, 68.9, 44.6, 22.0, 11.3; MS m/z 312.11 (M+H, 100); Anal. Calcd for C18H22ClN3O2 (347.56): C, 62.15; H, 6.37; N, 12.08. Found: C, 61.89; H, 6.34; N, 11.87.

6.6.3.26. 4-(Allyloxy)-N-(6-(butylamino)pyridin-2-yl)benzamide (35)

Compound 33 (208 mg, 1.0 mmol) and NaOH (180 mg, 4.5 mmol) were heated to reflux in 10 mL 1:1 H2O/ethanol (v/v) by the procedure used to hydrolyze ester 17 to yield pure N2-butyl-pyridine-2,6-diamine. N2-butylpyridine-2,6-diamine (166 mg, 1 mmol) and 4-allyloxybenzoyl chloride (7b, 197.4 mg, 1 mmol) were coupled using the procedure employed to prepare 8 to yield 35 (258 mg, 79%). Purification was carried out on a silica gel column using hexanes/ethyl acetate (3:1) to afford the pure compound as an off-white oil. It was further converted into its hydrochloric acid salt, mp 160–164 °C. 1H NMR (CDCl3, 300 MHz) δ 15.36 (s, 1H), 11.16 (s, 1H), 8.23 (d, J = 8.7 Hz, 2H), 7.84 (d, J = 8.1 Hz, 1H), 7.74 (dd, J = 8.4 Hz, 1H), 7.01 (d, J = 8.7 Hz, 2H), 6.66 (br, 1H), 6.46 (d, J = 8.4 Hz, 1H), 6.06 (m, 1H), 5.44 (d, J = 17.4 Hz, 1H), 5.33 (d, J =10.5 Hz, 1H), 4.61 (d, J = 5.1 Hz, 2H), 3.39 (m, 2H), 1.71 (m, 2H), 1.47 (m, 2H), 0.98 (t, J = 7.5 Hz, 3H); 13C NMR (CDCl3, 75 MHz) δ 165.6, 162.7, 151.3, 145.4, 145.2, 132.4, 130.5, 126.7, 124.2, 118.3, 114.9, 101.2, 68.9, 42.8, 30.7, 20.0, 13.9; ESI-MS m/z 326.11 (M+H, 100); Anal. Calcd for C19H24ClN3O2 (361.16): C, 63.06; H, 6.68; N, 11.61. Found: C, 63.11; H, 6.53; N, 11.45.

Acknowledgements

This work was supported by the National Institutes of Health National Institute on Drug Abuse (Grant DA029433). All stably transfected human cell lines were kindly provided by Dr. Jon M. Lindstrom, Department of Neuroscience School of Medicine, University of Pennsylvania, Philadelphia, PA.

Glossary

Abbreviations

NAM

negative allosteric modulator

nAChRs

neuronal nicotinic acetylcholine receptors

HBK

HEPES-buffered Krebs

LBVS

ligand-based virtual screening

SBVS

structure-based virtual screening

SAR

structure-activity relationship

nh

Hill coefficient

Footnotes

Author contributions

Experimental design: Bitna Yi, Tatiana Gonzalez-Cestari, Brandon J. Henderson, Ryan E. Pavlovicz, Karl Werbovetz, Chenglong Li.

Pharmacological assays: Bitna Yi, Tatiana Gonzalez-Cestari, Brandon J. Henderson.

Data analyses and interpretation: Bitna Yi, Tatiana Gonzalez-Cestari, Sihui Long, Karl Werbovetz, Dennis McKay.

Pharmacophore design: Brandon Henderson.

Ligand-based virtual screening: Brandon Henderson

Synthetic chemistry: Sihui Long

Manuscript writing: Bitna Yi, Sihui Long, Karl Werbovetz, Dennis McKay.

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