. Author manuscript; available in PMC: 2015 Mar 4.

Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2014 Aug 7;12(1):103–112. doi: 10.1109/TCBB.2014.2343960

TABLE 2.

Performance of Coarse Architecture Variation

Layers	Nodes	Q₃ (%)	Sov (%)
4	Many	79.45	72.36
3	Few	79.4	72.75
4	Few	79.12	72.22
6	Many	79.09	71.78
5	Many	78.73	71.63
6	Few	78.71	71.65
5	Few	78.49	71.68
3	Many	78.18	70.63

Scores show the average accuracy of deep networks trained using a coarse sampling of deep learning network architectures, evaluated using the test data set of 195 proteins and listed from highest to lowest ranked score.