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Bootscan analysis of the near full-length nucleotide sequences of BJMP3002B (A) and BJMP3026B (B). Bootscan analysis was performed using CRF01_AE, CRF07_BC, and subtype J reference sequences. The bootscan window was 300 bp with a step size of 10 bp using SimPlot 3.5.1 software. The x-axis is the nucleotide position in the HIV genomic sequence; the y-axis indicates the percentage supporting the clustering with reference sequences.
