|
Graph of node set V and of edge set E. |
|
Oriented sub-graph of node set V* and of oriented edge set E*. |
I* = V∖V* |
Set of isolated cells of . |
i ∼ j
|
Neighbouring cells i and j with (i, j) ∈ E. |
M = ∣V∣ |
Number of nodes of the graph . |
|
Neighbourhood of cell i, that is . |
d
i
|
Number of neighbours of cell i, i.e. . |
m
|
Number of membranes of the graph , i.e. m = |E|. |
a
i
|
Auxin concentration in cell i. |
a
ij
|
Auxin concentration in the membrane of cell i facing cell j. |
P
i
|
PIN concentration in cell i. |
p
ij
|
PIN concentration on the membrane of cell i facing cell j. |
V
i
|
Volume of cell i. |
S
ij
|
Surface area of the membrane separating cell i from cell j. |
W
|
Ratio of the surface area of membrane ij to the cell volume, when the cells are regular. |
|
Auxin flux through the membrane between cell i and j due the diffusion. |
|
Auxin flux through the membrane between cell i and j due the PIN active transport. |
J
i → j
|
net flux through the membrane ij. |
γ
D
|
Auxin diffusion rate. |
γ
A
|
Auxin active transport rate. |
D
|
Normalized auxin diffusion rate. |
T
|
Normalized active transport rate. |
|
Auxin synthesis rate in cell i. |
|
Auxin degradation rate in cell i. |
|
PIN production rate in cell i. |
|
PIN degradation rate in cell i. |
κ
|
Saturating constant. |
μ
|
Background PIN removal rate from the membranes. |
λ
|
PIN insertion rate in the membrane ij. |
h
|
Non-linear response function. |
Φ(x) |
= h(x/W). |