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. 2015 Mar 3;10(3):e0118238. doi: 10.1371/journal.pone.0118238

Table 1. Notations.

𝓖=(V,E) Graph of node set V and of edge set E.
𝓖*=(V*,E*) Oriented sub-graph of node set V* and of oriented edge set E*.
I* = VV* Set of isolated cells of 𝓖.
ij Neighbouring cells i and j with (i, j) ∈ E.
M = ∣V Number of nodes of the graph 𝓖.
Ni Neighbourhood of cell i, that is Ni={kV|k~i}.
d i Number of neighbours of cell i, i.e. di=|Ni|.
m Number of membranes of the graph 𝓖, i.e. m = |E|.
a i Auxin concentration in cell i.
a ij Auxin concentration in the membrane of cell i facing cell j.
P i PIN concentration in cell i.
p ij PIN concentration on the membrane of cell i facing cell j.
V i Volume of cell i.
S ij Surface area of the membrane separating cell i from cell j.
W Ratio of the surface area of membrane ij to the cell volume, when the cells are regular.
JijD Auxin flux through the membrane between cell i and j due the diffusion.
JijA Auxin flux through the membrane between cell i and j due the PIN active transport.
J ij JijD+JijA= net flux through the membrane ij.
γ D Auxin diffusion rate.
γ A Auxin active transport rate.
D Normalized auxin diffusion rate.
T Normalized active transport rate.
αai Auxin synthesis rate in cell i.
βai Auxin degradation rate in cell i.
αpi PIN production rate in cell i.
βpi PIN degradation rate in cell i.
κ Saturating constant.
μ Background PIN removal rate from the membranes.
λ PIN insertion rate in the membrane ij.
h Non-linear response function.
Φ(x) = h(x/W).