Table II. Top 30 genes in PTI versus control.

Arabidopsis Genome Initiative No.	Name	Function in Plant Immunitya	NGF IS
At1g68520	B-BOX DOMAIN PROTEIN14 (BBX14)	SA-mediated signaling pathway	0.660
At2g02450	LOV1	Unknown	0.573
At4g23810	WRKY53	Coordinates with WRKY46 in basal resistance	0.453
At4g18880	HEAT SHOCK TRANSCRIPTION FACTORA4A	Response to chitin; substrate of the MITOGEN-ACTIVATED PROTEIN KINASE3 (MPK3)/MPK6 signaling	0.382
At4g01090		Unknown	0.379
At1g72610	GERMIN-LIKE PROTEIN GLP1	Unknown	0.377
At2g24570	WRKY17	Negative regulator of basal resistance	0.361
At5g18150		Unknown	0.346
At1g14370	AVRPPHB SUSCEPTIBLE1 -LIKE2 (PBL2)	Cleaved by effector protein AvrPphB; pbl2 mutant showed significantly reduced callose deposition in 22-amino acid motif of the bacterial flagellin (flg22) and N-term of elongation factor with the first 18 amino acid residues treatment	0.340
At1g69770	CHROMOMETHYLASE3	Involved in defense response-related DNA methylation	0.303
At3g26085		Unknown	0.276
At3g46780	PLASTID TRANSCRIPTIONALLY ACTIVE16	Unknown	0.275
At5g04870	CPK1	Control onset of cell death triggered by RESISTANT TO P. SYRINGAE2 and RESISTANCE TO P. SYRINGAE PV MACULICOLA1 (RPM1)	0.271
At2g38470	WRKY33	Key transcriptional regulator of and hormonal and metabolic responses to necrotroph	0.268
At1g34310	AUXIN RESPONSE FACTOR12	Unknown	0.259
At3g17700	CYCLIC NUCLEOTIDE GATED CHANNEL20	Regulation of plant-type hypersensitive response	0.257
At2g29100	GLU RECEPTOR2.9	Unknown	0.255
At5g05190		Unknown	0.255
At4g02410	LECTIN-LIKE PROTEIN KINASE1	Confers Arabidopsis pathogen resistance when overexpressed	0.250
At2g33500	BBX12	Unknown	0.247
At5g25930		Unknown	0.245
At4g09570	CPK4	Directly phosphorylates WRKY8/WRKY28/WRKY48	0.244
At4g14540	NUCLEAR FACTOR Y, SUBUNIT B3	Unknown	0.243
At2g30250	WRKY25	Negative regulator of SA-mediated defense responses	0.238
At3g59060	PHYTOCHROME INTERACTING FACTOR 3-LIKE6	Unknown	0.235
At3g07040	RPM1	Resistance (R) gene	0.233
At1g35420		Unknown	0.229
At5g11060	KNOTTED1-LIKE HOMEOBOX GENE4	Unknown	0.228
At3g55250	PIGMENT DEFECTIVE329	Unknown	0.224
At1g75460		Unknown	0.222

^aComplete functional annotation of each gene and the corresponding references are provided in Supplemental Table S6.