Table IV. Correctly processed plastid proteins identified with TAILS in tic56-1 (thylakoid proteins).
Chloroplast proteins are listed that were identified in their mature (i.e. correctly processed) form on the basis of their N-terminal peptides in tic56-1. Most processing events of nucleus-encoded plastid proteins are consistent with the ChloroP prediction or the UniProt entry for thylakoid lumenal proteins, arguing for functional import and functional processing peptidases. Thylakoid proteins were classified according to AT_CHLORO (Ferro et al., 2010). Proteins were classified into pathways using MapMan (Thimm et al., 2004).
| Identifier | Description | Start, TAILS | Start, ChloroP/UniProt | MapMan Classification/Thylakoid Import Pathway |
|---|---|---|---|---|
| AT1G03130.1 | PSAD-2/PSI subunit D-2 | 45 | 44/45 | PS.lightreaction.photosystem I.PSI polypeptide subunits/ not assigned |
| AT1G03600.1 | PSB27/PSII family protein | 69 | 68/69 | PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat |
| AT1G54780.1 | TLP18.3/thylakoid lumen 18.3-kD protein | 85 | 80/85 | not assigned.no ontology/ Sec |
| AT1G71500.1 | Rieske (2Fe-2S) domain-containing protein | 64 | 63/– | misc. other Ferredoxins and Rieske domain/ not assigned |
| AT2G01140.1 | Aldolase superfamily protein | 41 | 41/40 | PS.calvin cycle.aldolase/ not assigned |
| AT2G17630.1 | Pyridoxal phosphate-dependent transferases superfamily protein | 51 | 50/– | amino acid metabolism.synthesis.Ser-Gly-Cys group.Ser.phospho-Ser aminotransferase/ not assigned |
| AT3G44880.1 | ACD1, LLS1, PAO/pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain | 50 | 50/50 | cell.cell death.plants/ not assigned |
| AT3G56650.1 | Mog1/PsbP/DUF1795-like PSII reaction center PsbP family protein | 68 | 66/68 | PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat |
| AT3G57560.1 | NAGK/N-acetyl-l-Glu kinase | 50 | 50/51 | nucleotide metabolism.phosphotransfer and pyrophosphatases.misc/ not assigned |
| AT4G02530.1 | Chloroplast thylakoid lumen protein | 74 | 39/74 | not assigned.no ontology/ Tat |
| AT4G02770.1 | PSAD-1/PSI subunit D-1 | 46 | 45/46 | PS.lightreaction.photosystem I.PSI polypeptide subunits/ not assigned |
| AT4G04020.1 | FIB/fibrillin | 56 | 56/56 | cell.organization/ not assigned |
| AT4G05180.1 | PSBQ, PSBQ-2, PSII-Q/PSII subunit Q-2 | 83 | 49/85 | PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat |
| AT4G09650.1 | ATPD/ATP synthase δ-subunit gene | 48 | 49/– | PS.lightreaction.ATP synthase.delta chain/ not assigned |
| AT4G21280.1 | PSBQ, PSBQA, PSBQ-1/PSII subunit QA | 76 | 45/78 | PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat |
| AT5G08740.1 | NDC1/NAD(P)H dehydrogenase C1 | 53 | 53/53 | mitochondrial electron transport / ATP synthesis.NADH-DH.type II.mitochondrial/ not assigned |
| AT5G23120.1 | HCF136/PSII stability/assembly factor, chloroplast (HCF136) | 79 | 61/79 | PS.lightreaction.photosystem II.biogenesis/ Tat |