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. 2015 Jan 14;167(3):972–990. doi: 10.1104/pp.114.255562

Table IV. Correctly processed plastid proteins identified with TAILS in tic56-1 (thylakoid proteins).

Chloroplast proteins are listed that were identified in their mature (i.e. correctly processed) form on the basis of their N-terminal peptides in tic56-1. Most processing events of nucleus-encoded plastid proteins are consistent with the ChloroP prediction or the UniProt entry for thylakoid lumenal proteins, arguing for functional import and functional processing peptidases. Thylakoid proteins were classified according to AT_CHLORO (Ferro et al., 2010). Proteins were classified into pathways using MapMan (Thimm et al., 2004).

Identifier Description Start, TAILS Start, ChloroP/UniProt MapMan Classification/Thylakoid Import Pathway
AT1G03130.1 PSAD-2/PSI subunit D-2 45 44/45 PS.lightreaction.photosystem I.PSI polypeptide subunits/ not assigned
AT1G03600.1 PSB27/PSII family protein 69 68/69 PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat
AT1G54780.1 TLP18.3/thylakoid lumen 18.3-kD protein 85 80/85 not assigned.no ontology/ Sec
AT1G71500.1 Rieske (2Fe-2S) domain-containing protein 64 63/– misc. other Ferredoxins and Rieske domain/ not assigned
AT2G01140.1 Aldolase superfamily protein 41 41/40 PS.calvin cycle.aldolase/ not assigned
AT2G17630.1 Pyridoxal phosphate-dependent transferases superfamily protein 51 50/– amino acid metabolism.synthesis.Ser-Gly-Cys group.Ser.phospho-Ser aminotransferase/ not assigned
AT3G44880.1 ACD1, LLS1, PAO/pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain 50 50/50 cell.cell death.plants/ not assigned
AT3G56650.1 Mog1/PsbP/DUF1795-like PSII reaction center PsbP family protein 68 66/68 PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat
AT3G57560.1 NAGK/N-acetyl-l-Glu kinase 50 50/51 nucleotide metabolism.phosphotransfer and pyrophosphatases.misc/ not assigned
AT4G02530.1 Chloroplast thylakoid lumen protein 74 39/74 not assigned.no ontology/ Tat
AT4G02770.1 PSAD-1/PSI subunit D-1 46 45/46 PS.lightreaction.photosystem I.PSI polypeptide subunits/ not assigned
AT4G04020.1 FIB/fibrillin 56 56/56 cell.organization/ not assigned
AT4G05180.1 PSBQ, PSBQ-2, PSII-Q/PSII subunit Q-2 83 49/85 PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat
AT4G09650.1 ATPD/ATP synthase δ-subunit gene 48 49/– PS.lightreaction.ATP synthase.delta chain/ not assigned
AT4G21280.1 PSBQ, PSBQA, PSBQ-1/PSII subunit QA 76 45/78 PS.lightreaction.photosystem II.PSII polypeptide subunits/ Tat
AT5G08740.1 NDC1/NAD(P)H dehydrogenase C1 53 53/53 mitochondrial electron transport / ATP synthesis.NADH-DH.type II.mitochondrial/ not assigned
AT5G23120.1 HCF136/PSII stability/assembly factor, chloroplast (HCF136) 79 61/79 PS.lightreaction.photosystem II.biogenesis/ Tat