Table II. RNAseq read counts and percentage mapping statistics to the Z. tritici genome.

Sample	No. of Reads	No. of Reads Mapped to the Z. tritici Genome	Percentage of Reads Mapped to the Z. tritici Genome
CDB-1	32,770,793	28,316,903	86.41
CDB-2	67,034,959	58,476,386	87.23
CDB-3	23,162,180	20,887,165	90.18
PDB-1	38,371,061	31,325,941	81.64
PDB-2	38,516,569	33,946,087	88.13
PDB-3	20,672,941	19,301,735	93.37
Day1-1	35,526,015	453,509	1.28
Day1-2	41,492,156	727,796	1.75
Day1-3	27,254,131	181,633	0.67
Day4-1	54,948,633	269,050	0.49
Day4-2	46,752,435	334,890	0.72
Day4-3	24,856,079	924,376	3.72
Day9-1	47,320,630	1,335,339	2.82
Day9-2	41,382,074	2,122,459	5.13
Day9-3	24,052,623	1,517,352	6.31
Day14-1	49,844,627	8,818,097	17.69
Day14-2	39,071,063	16,476,967	42.17
Day14-3	21,605,374	13,004,622	60.19
Day21-1	33,043,199	26,201,287	79.29
Day21-2	43,409,156	36,939,935	85.10
Day21-3	19,798,698	15,420,296	77.89