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. 2015 Jan 8;7(2):465–480. doi: 10.1093/gbe/evu292

Table 2.

Gene Numbers in Nonrandomly Evolving Gene Families

graphic file with name evu292t2.jpg

Note.—Gene numbers boxed in black indicate a significant (P ≤ 0.05) expansion, whereas gene numbers boxed in gray indicate a significant (P ≤ 0.05) contraction of gene family size. Note that 62 gene families with changes restricted to Fusarium oxysporum f. sp. lycopersici, Fusarium verticillioides and their ancestor is not shown (see supplementary file S3, Supplementary Material online).

aAnnotation is based on BLASTP analysis (E value ≤ 1e-10) of the NCBI nr database, or from the SMART protein analysis tool. Species abbreviations: CR, Clonostachys rosea; FG, Fusarium graminearum; FO, Fusarium oxysporum f. sp. lycopersici; FS, Fusarium solani; FV, Fusarium verticillioides; MO, Magnaporthe oryzae; NC, Neurospora crassa; TA, Trichoderma atroviride; TR, Trichoderma reesei; TV, Trichoderma virens.