Table 2.
Model Partitioning in Coiled-Coil Proteins
| Protein | Conservation (bit) | Coiled-Coil Content (%) | Best Model |
|---|---|---|---|
| SMC3 | 3.86 | 34 | — |
| MYH6 | 3.78 | 56 | CC+LG |
| Desmin | 3.76 | 63 | CC+LG |
| KIF5B | 3.72 | 49 | CC+LG |
| SMC1 | 3.66 | 46 | — |
| MYH9 | 3.59 | 56 | CC+LG |
| SMC4 | 3.25 | 39 | CC+LG |
| SMC2 | 3.09 | 44 | — |
| KIF4A | 3.09 | 32 | CC+LG |
| Ndc80 | 3.05 | 37 | — |
| KIF7 | 3.03 | 33 | CC+LG |
| NUF2 | 2.85 | 20 | CC |
| NuMA | 2.84 | 67 | — |
Note.—Phylogenetic inference using a single model or model partitioning in proteins with different sequence divergence and coiled-coil content. The best model is chosen based on the Wilcoxon test, “—” indicates no significant difference between models.