Table 3.

Orthology Prediction Comparison with BLOSUM62 and CC140 Scoring Matrices

	Pan-Taxonomic			Chordata
	BLOSUM62	CC140	${\Delta }_{\text{CC140-BLOSUM62}}$	BLOSUM62	CC140	${\Delta }_{\text{CC140-BLOSUM62}}$
Sensitivity (%)	35.42	36.14	0.72***	60.44	62.12	1.68***
Specificity (%)	97.53	97.10	−0.42***	87.25	85.27	−1.98***
Precision (%)	86.39	87.55	1.16	86.80	88.19	1.39*
mcc (%)	39.59	39.94	0.34	24.84	24.59	−0.25

***$P<0.001$, *$P<0.05$, Wilcoxon test.