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. 2015 Jan 23;7(2):581–590. doi: 10.1093/gbe/evv013

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© The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1.— — Spatial overview of the transcriptome and the sex chromosome (XIX) of the threespine stickleback. (A) The X chromosome of the threespine stickleback consists of three regions: The PAR, stratum I, and stratum II. (B) The transcriptome was assembled from a total of 30,336 genes. Chromosomes are labeled with roman numbers and sizes are provided in mega bases (Mb; unmapped scaffolds are not shown). The expression fold-change of genes and their mean baseline expression level as reported from the DESeq2 analysis were smoothed for this figure using a sliding window approach implemented in the R package “zoo” (Zeileis and Grothendieck 2005). The inner two circles show the spatial distribution of genes with male- and female-biased expression along the transcriptome. The figure was generated using the R package “ggbio” (Yin et al. 2012).