Table 1. TOP 10 SNPs for the right superior frontal gyrus.
Rank | SNP | Chr | Bp | m | M | MAF |
Combined subjects |
Schizophrenia |
Controls |
Closest gene | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N | β | P | N | β | P | N | β | P | ||||||||
1 | rs4654899 | 1 | 21410231 | A | C | 0.33 | 509 | −969.5 | 7.52E−09 | 153 | −1164 | 3.71E−04 | 356 | −935.9 | 1.86E−06 | EIF4G3 |
2 | rs6702110 | 1 | 21515906 | G | A | 0.32 | 526 | −965.3 | 1.07E−08 | 155 | −1255 | 1.79E−04 | 371 | −902.3 | 4.34E−06 | EIF4G3 |
3 | rs6700718 | 1 | 21299363 | A | C | 0.33 | 537 | −895.1 | 2.89E−08 | 159 | −1110 | 4.68E−04 | 378 | −847.7 | 6.81E−06 | EIF4G3 |
4 | rs10218584 | 1 | 21474480 | G | C | 0.33 | 537 | −891.8 | 3.21E−08 | 159 | −1110 | 4.68E−04 | 378 | −842.7 | 7.68E−06 | EIF4G3 |
5 | rs1354792 | 1 | 21391875 | C | T | 0.33 | 535 | −892.7 | 3.46E−08 | 157 | −1114 | 5.35E−04 | 378 | −847.7 | 6.81E−06 | EIF4G3 |
6 | rs6703227 | 1 | 21374810 | C | T | 0.33 | 537 | −879.3 | 5.28E−08 | 159 | −1056 | 9.55E−04 | 378 | −847.7 | 6.81E−06 | EIF4G3 |
7 | rs1609558 | 1 | 21525228 | C | T | 0.30 | 533 | −899.8 | 5.36E−08 | 158 | −1031 | 1.18E−03 | 375 | −870.9 | 7.67E−06 | EIF4G3 |
8 | rs12402486 | 1 | 21447935 | A | G | 0.34 | 527 | −880.9 | 5.58E−08 | 159 | −1110 | 4.68E−04 | 368 | −830 | 1.20E−05 | EIF4G3 |
9 | rs2874367 | 1 | 21324491 | A | C | 0.33 | 531 | −874.5 | 7.19E−08 | 157 | −1092 | 6.24E−04 | 374 | −829 | 1.25E−05 | EIF4G3 |
10 | rs6945071 | 7 | 26122423 | G | A | 0.16 | 537 | −1035 | 8.46E−07 | 159 | −1120 | 3.25E−03 | 378 | −983.2 | 1.02E−04 | NFE2L3 |
Abbreviations: Chr, chromosome; Bp, nucleotide location; m, minor allele; M, major allele; MAF, minor allele frequency; SNP, single-nucleotide polymorphism. Genome-wide significant P-values are shown as bold font and are underlined.