Table 1.
General features of the DMR (Fukomys damarensis) genome and the improved NMR (Heterocephalus glaber) genome assembly. See also Figures S1A and S1B.
| Sequencing | Fukomys damarensis | Heterocephalus glaber | ||||
|---|---|---|---|---|---|---|
| Insert size(bp) | Total data (Gb) | Sequence coverage (X) | Insert size(bp) | Total data (Gb) | Sequence coverage (X) | |
| Pair end library | 250~800 | 151.6 | 50.5 | 170~800 | 126.5 | 46.9 |
| 2~20×103 | 77.5 | 25.8 | 2~20×103 | 120.7 | 44.7 | |
| Total | 229.0 | 76.4 | Total | 247.2 | 91.6 | |
| Assembly | N50 (kb) | Longest (kb) | Size (Gb) | N50 (kb) | Longest (kb) | Size (Gb) |
|---|---|---|---|---|---|---|
| Contig | 22.9 | 229.6 | 2.46 | 19.3 | 178.9 | 2.45 |
| Scaffold | 4,996 | 22,231 | 2.51 | 21,307 | 80,826 | 2.75 |
| Annotation | Number | Total length (Mb) | Percentage of genome | Number | Total length (Mb) | Percentage of genome |
|---|---|---|---|---|---|---|
| Repeats | 4,585,125 | 717.6 | 28.6 | 3,090,116 | 666.7 | 24.2 |
| Genes | 22,179 | 745.6 | 29.7 | 22,561 | 722.3 | 26.3 |
| CDS | 187,627 | 33.0 | 1.31 | 181,641 | 32.5 | 1.18 |