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. 2015 Feb 27;16(1):135. doi: 10.1186/s12864-015-1325-7

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© Lai et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Transcriptome divergence between marine and freshwater medaka. A) Nucleotide identity between Oryzias melastigma and Oryzias latipes orthologs deposited in the NCBI nucleotide database. Only those with an alignment length >75% are shown. B) Nucleotide identity between all O. melastigma and O. latipes orthologs. C) Low mapping rate of O. melastigma RNA-Seq data generated in this study onto the O. latipes UniGENE dataset. The mapping rate is highest for liver and lowest for brain. D) The nucleotide identity between transcripts (Ensemble Assembly) assembled in this study and the O. latipes UniGENE dataset. Only those with alignment length >75% are shown.