Table 8.
HPV58 LCR sequence variation with regard to the reference sequence D90400.1. The table also shows the transcriptional factor binding sites in the nucleotide altered.
| Genome position |
Nucleotide variation |
Number of isolates |
Transcriptional factor |
|---|---|---|---|
| 7150 | G/T | 1/6 | |
| 7169 | Del TATACAT* | 1/6 | |
| 7187 | T/C | 1/6 | |
| 7188 | T/A | 1/6 | |
| 7189 | A/C | 1/6 | |
| 7189 | Del A | 1/6 | |
| 7188 | Del TATGT | 1/6 | |
| 7197 | G/C | 1/6 | |
| 7202 | C/T | 1/6 | |
| 7210 | T/A | 3/6 | |
| 7233 | G/A | 1/6 | |
| 7244 | C/A | 1/6 | YY1 |
| 7268 | C/G | 1/6 | YY1 |
| 7269 | C/T | 2/6 | YY1 |
| 7283 | Ins TGTCAGTTTCCT | 1/6 | |
| 7299 | C/G | 3/6 | |
| 7319 | A/G | 1/6 | |
| 7347 | G/A | 1/6 | Oct-1, C/EBPbeta |
| 7360 | T/C | 1/6 | NF-1 |
| 7384 | T/G | 1/6 | C/EBPbeta |
| 7410 | G/A | 1/6 | |
| 7436 | G/A | 1/6 | Oct-1, C/EBPbeta |
| 7444 | T/G | 1/6 | |
| 7446 | T/G | 1/6 | |
| 7450 | A/G | 1/6 | |
| 7498 | T/G | 1/6 | |
| 7537 | T/C | 2/6 | |
| 7701 | G/A | 1/6 | |
| 7729 | A/C | 1/6 | |
| 7739 | A/G | 2/6 | |
| 7745 | C/A | 3/6 | NF-1 |
| 7760 | G/C | 1/6 | AP-1 |
| 7760 | A/G | 1/6 | AP-1 |
| 7793 | T/C | 1/6 | E2 |
| 7794 | A/G | 3/6 | E2 |
Del: deletion,Ins: insertion. *Novel HPV58 deletion.