Table 3.
Intergenic regions coding for putative novel transcripts in exosomes
| L. donovani | L. braziliensis | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Coordinates | No. of reads | No. of ORF | Name | Coordinates | No. of reads | No. of ORF | ||
| LdBPK_301180_leftof | 379397 | 380435 | 363 | 7 | LbrM.30.1240_leftof | 394563 | 397304 | 317 | 13 |
| LdBPK_291610_leftof | 706385 | 707360 | 181 | 9 | LbrM.29.1600_leftof | 663702 | 664543 | 103 | 7 |
| LdBPK_360420_leftof | 109068 | 109733 | 139 | 3 | LbrM.35.0480_leftof | 132138 | 133299 | 185 | 5 |
| LdBPK_363000_leftof | 1183324 | 1183522 | 132 | 1 | LbrM.35.3080_leftof | 1176690 | 1176833 | 36 | 1 |
| LdBPK_362290_leftof | 872006 | 872406 | 89 | 5 | LbrM.35.2400_leftof | 892711 | 895894 | 29 | 28 |
| LdBPK_313190_leftof | 1452630 | 1452719 | 83 | 1 | LbrM.31.3490_leftof | 1508257 | 1510948 | 0 | N.A. |
| LdBPK_040550_leftof | 225336 | 230737 | 80 | 8 | LbrM.04.0610_leftof | 229925 | 233378 | 111 | 25 |
| LdBPK_131560_leftof | 555895 | 556192 | 75 | 2 | LbrM.13.1200_leftof | 433509 | 433481 | 0 | N.A. |
| LdBPK_364270_leftof | 1570740 | 1570991 | 57 | 1 | LbrM.35.4310_leftof | 1563654 | 1563940 | 29 | 2 |
| LdBPK_366120_leftof | 2270195 | 2272110 | 49 | 13 | LbrM.35.6160_leftof | 2242345 | 2244214 | 153 | 14 |
| LdBPK_330560_leftof | 173136 | 173362 | 40 | 0 | LbrM.33.0550_leftof | 184438 | 184751 | 19 | 1 |
| LdBPK_366590_leftof | 1903364 | 1906720 | 0 | N.A. | LbrM.35.6630_leftof | 2438694 | 2438825 | 155 | 0 |
List of 12 intergenic regions identified with numbers of reads mapping to them listed by descending order of abundance in the L. donovani library, with the homologous genomic region in the L. braziliensis library given in the same row. Names are derived from the annotated genes adjacent to the intergenic region plus the designation “_leftof”, indicating that the intergenic region is on the left side of the annotated gene on the same strand, regardless of transcriptional direction. There is 75% overlap of intergenic regions coding for novel transcripts in the L. donovani and L. braziliensis libraries. ORF, open reading frame. N.A., not applicable.