Table 3. Evolution of Structure and the QM/MM-Derived νFeHis of the Deligated α and β Subunits during the PELE Simulation.
| α
chain |
β chain |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| step | νFeHisa | db | θc | RMSDTd | RMSDRe | νFeHisa | db | θc | RMSDTd | RMSDRe |
| R* | 223 | 2.132 | 92.0 | – | – | 220 | 2.140 | 92.3 | – | – |
| R | 213 | 2.198 | 94.6 | 1.59 | 0.00 | 215 | 2.194 | 96.4 | 3.68 | 0.00 |
| 1 | 210 | 2.212 | 99.4 | 1.62 | 0.77 | 213 | 2.191 | 100.7 | 3.77 | 0.84 |
| 10 | 205 | 2.233 | 102.1 | 1.48 | 0.74 | 203 | 2.201 | 96.9 | 3.67 | 0.88 |
| 20 | 200 | 2.232 | 104.5 | 1.46 | 0.93 | 204 | 2.199 | 100.0 | 3.68 | 0.94 |
| 30 | 199 | 2.234 | 103.2 | 1.53 | 0.87 | 204 | 2.200 | 98.8 | 3.70 | 0.80 |
| 40 | 201 | 2.218 | 102.4 | 1.46 | 0.88 | 205 | 2.209 | 98.4 | 3.65 | 0.90 |
| 50 | 195 | 2.251 | 105.0 | 1.45 | 0.89 | 206 | 2.199 | 101.0 | 3.69 | 0.82 |
| T | 197(2) | 2.24(1) | 102(2) | 0.00 | 1.59 | 204(2) | 2.21(1) | 102(2) | 0.00 | 3.68 |
Fe–His stretching frequency (cm–1).
Fe–His bond length (Å).
Heme-His tilting angle (“C” pyrrole nitrogen–iron–His Nε angle in degrees).
RMSD of α carbon displacements (Å) between the PELE intermediate and the deoxyHb crystal structure (1A3N)8 for the α1 (left) or β1 (right) subunits.
RMSD of α carbon displacements (Å) between the PELE intermediate and the initial R structure for the α1 (left) or β1 (right) subunits.