Table 6.
Comparison of the core microbiome (found within all our samples) within this study, and that reported by Li and colleagues (2012) and Jami and Mizrahi (2012) at the genus level
| Genus (alphabetical order) | Our study | Li and colleagues (2012) | Jami and Mizrahi (2012) | Found in all three studies |
|---|---|---|---|---|
| Acetivibrio | + | + | − | N |
| Adiercreutzia | − | − | + | N |
| Akkermansia | − | + | − | N |
| Aeromonadales | − | − | + | N |
| Alcaligenes | + | − | − | N |
| Alistipes | − | + | − | N |
| Anaerosporobacter | + | − | − | N |
| Anaerotruncus | − | + | − | N |
| Anaerovorax | − | + | − | N |
| Bacteria; other; other; other; other; other (unclassified) | + | − | − | N |
| Bacteroides | + | + | − | N |
| Barnesiella | − | + | − | N |
| Blautia | + | − | + | N |
| Bulleida | − | + | + | N |
| Butyricimonas | − | + | − | N |
| Butyrivibrio | + | − | + | N |
| Campylobacter | − | + | − | N |
| Cloacibacillus | − | + | − | N |
| Clostridium (including unclassified members) | + | + | + | Y |
| Comamonas | − | + | − | N |
| Coprococcus | + | + | + | Y |
| Coriobacteriaceae; other | + | − | + | N |
| Desulfovibrio | − | + | + | N |
| Dorea | − | + | − | N |
| Erysipelotrichaceae; other | + | − | − | N |
| Eubacterium | + | + | + | Y |
| Faecalibacterium | − | + | − | N |
| Fibrobacter | + | + | − | N |
| Firmicutes; other unclassified | + | − | − | N |
| Fusobacterium | − | + | − | N |
| F16 | − | − | + | N |
| Guggenheimella | − | + | − | N |
| Lachnobacterium | + | − | + | N |
| Lachnospira | − | − | + | N |
| Lachnospiraceae (including unclassified members) | + | − | + | N |
| Microbacteriaceae | + | − | − | N |
| Mitzuokella | − | − | + | N |
| Moryella | + | − | + | N |
| Odoribacter | − | + | − | N |
| Olsonella | + | − | − | N |
| Oribacterium | + | − | − | N |
| Oscillospira | − | − | + | N |
| Paludibacter | − | + | − | N |
| Papillibacter | − | + | − | N |
| Parabacteroides | − | + | − | N |
| Paraprevotella | − | + | − | N |
| Phascolarctobacterium | − | + | − | N |
| Pigmentiphaga | − | + | − | N |
| Porphorymonas | − | + | − | N |
| Prevotella | + | + | + | Y |
| Pseudobutyrivibrio | + | + | − | N |
| Proteobacteria; other (unclassified) | + | − | − | N |
| p-75-a5 | − | − | + | N |
| Rikenella | − | + | − | N |
| Robinsoniella | − | + | − | N |
| Roseburia | − | + | + | N |
| Ruminococcaceae (including unclassified members) | + | + | + | Y |
| Saccharofermentas | + | − | − | N |
| Selenomonas | + | − | + | N |
| Shuttleworthia | − | − | + | N |
| Sphingobacterium | − | + | − | N |
| Sporobacter | − | + | − | N |
| Streptococcus | − | + | − | N |
| Subdoligranulum | − | + | − | N |
| Succiniclasticum | + | + | + | Y |
| Succinivibrio | − | + | − | N |
| Tetrathiobacter | − | + | − | N |
| Treponema | − | + | − | N |
| Veillonella | + | + | − | N |
| Victivalis | + | − | − | N |
| YS2 | − | − | + | N |
+, present; −, absent; Y, yes; N, no.