Table 5.
Performance evaluation to mask low-quality nucleotides.
| Tool | Dataset | Masked nucl. (%) | Time | Memory |
|---|---|---|---|---|
| G-CNV | SRR001220 | 24.2 | 5 s | 0.94 GB |
| SRR001205 | 43.6 | 10 s | 1.38 GB | |
| SRR005720 | 21.8 | 52 s | 3.88 GB | |
| SRR921889 | 3 | 1 min 15 s | 12 GB | |
| FASTX-Toolkit | SRR001220 | 24.2 | 1 min | 256 KB |
| SRR001205 | 43.6 | 1 min 8 s | 256 KB | |
| SRR005720 | 21.8 | 4 min 22 s | 256 KB | |
| SRR921889 | 3 | 17 min 20 s | 256 KB |
The first and the second column of the table report the tool and the analyzed library, respectively. The third column the percentage of masked nucleotides. Column fourth reports the computing time required to analyze the different libraries. The fifth column the peak of memory required to perform the analysis.