Sample	CF1-D	CF1-F	CF4-B	CF4-C
Treatment	None	Ribo-Zero	None	Ribo-Zero	None	Ribo-Zero	None	Ribo-Zero
Preprocessed reads	2,088	1,991	40,876	25,238	19,728	32,737	31,791	36,172
Mean read length	275	245	262	270	233	259	240	267
Total rRNA reads	1,737	91	29,499	17,267	5,285	291	16,371	1,761
83.20%	4.60%	72.20%	68.40%	26.80%	0.90%	51.50%	4.90%
Microbial rRNA	1,414	32	19,978	12,035	23	227	6,916	1,076
67.70%	1.60%	48.90%	47.70%	0.10%	0.70%	21.80%	3.00%
Eukaryota rRNA	323	59	9,520	5,232	5,262	64	9,455	683
15.50%	3.00%	23.30%	20.70%	26.70%	0.20%	29.70%	1.90%
% rRNA removed*	0%	95%	0%	5%	0%	97%	0%	91%
Non-rRNA reads	351 (16.8%)	1,900 (95.4%)	11,377 (27.8%)	7,971 (31.6%)	14,443 (73.2%)	32,446 (99.1%)	15,420 (48.5%)	34,411 (95.1%)
Total NR hits	102 (4.9%)	691 (34.7%)	3,327 (8.1%)	2,857 (11.3%)	4,938 (25.0%)	10,751 (32.8%)	5,905 (18.6%)	15,766 (43.6%)
Eukaryotic	74	407	2,790	2,524	4,614	10,227	4,553	8,274
Bacterial	26	283	520	312	287	471	1,326	7,442
Unassigned reads	249 (11.9%)	1,209 (60.7%)	8,050 (19.7%)	5,114 (20.3%)	9,505 (48.2%)	21,695 (66.3%)	9,515 (29.9%)	18,645 (51.5%)
*The amount of rRNA removed expressed as a percentage of the amount present in the non-depleted aliquot.