Table 4.
SNP association analysis in cattle population.
| Traits | Markers | P | Named allele | Effect | SE | %Va |
|---|---|---|---|---|---|---|
| BW (kg) | ADIPOQ/BsrI | 0.08 | C | − 0.57 | 0.20 | 0.32 |
| W210 (kg) | ADIPOQ/BsrI | 0.91 | C | 0.08 | 0.06 | 0.00 |
| W550 (kg) | ADIPOQ/BsrI | 0.77 | C | − 0.19 | 0.07 | 0.01 |
| H550 (cm) | ADIPOQ/BsrI | 0.23 | C | − 0.46 | 0.14 | 0.10 |
| W378 (kg) | ADIPOQ/BsrI | 0.13 | C | − 0.63 | 0.12 | 0.20 |
| H378 (cm) | ADIPOQ/BsrI | 0.25 | C | − 0.38 | 0.09 | 0.39 |
| LEA (cm2) | ADIPOQ/BsrI | 0.65 | C | − 0.10 | 0.07 | 0.03 |
| RF (mm) | ADIPOQ/BsrI | 0.57 | C | 0.03 | 0.02 | 0.06 |
| BF (mm) | ADIPOQ/BsrI | 0.38 | C | 0.10 | 0.05 | 0.10 |
| BW (kg) | OLR1/PstI | 0.15 | A | − 0.19 | 0.11 | 0.19 |
| W210 (kg) | OLR1/PstI | 0.02 | A | − 2.57 | 1.51 | 1.79 |
| W550 (kg) | OLR1/PstI | 0.13 | A | − 2.86 | 2.05 | 0.21 |
| H550 (cm) | OLR1/PstI | 0.39 | A | − 0.30 | 0.18 | 0.13 |
| W378 (kg) | OLR1/PstI | 0.10 | A | − 0.26 | 0.09 | 0.24 |
| H378 (cm) | OLR1/PstI | 0.26 | A | − 0.31 | 0.13 | 0.18 |
| LEA (cm2) | OLR1/PstI | 0.14 | A | − 0.74 | 0.38 | 0.32 |
| RF (mm) | OLR1/PstI | 0.04 | A | − 0.09 | 0.02 | 1.06 |
| BF (mm) | OLR1/PstI | 0.88 | A | 0.02 | 0.01 | 0.00 |
| BW (kg) | PPARGC1/NheI | 0.11 | A | − 0.34 | 0.17 | 0.24 |
| W210 (kg) | PPARGC1/NheI | 0.15 | A | − 2.03 | 1.13 | 0.95 |
| W550 (kg) | PPARGC1/NheI | 0.79 | A | − 0.07 | 0.04 | 0.00 |
| H550 (cm) | PPARGC1/NheI | 0.70 | A | − 0.16 | 0.07 | 0.01 |
| W378 (kg) | PPARGC1/NheI | 0.02 | A | − 0.98 | 0.11 | 1.12 |
| H378 (cm) | PPARGC1/NheI | 0.14 | A | − 0.59 | 0.09 | 0.64 |
| LEA (cm2) | PPARGC1/NheI | 0.56 | A | − 0.14 | 0.06 | 0.09 |
| RF (mm) | PPARGC1/NheI | 0.53 | A | 0.04 | 0.01 | 0.07 |
| BF (mm) | PPARGC1/NheI | 0.53 | A | 0.03 | 0.03 | 0.02 |
The bold emphasis means the significant markers (p < 0.05).
Significance (P), allelic substitution effect (effect) for the named allele of each SNP, its standard error (SE) and the percentage of additive genetic variance (%Va) explained by the genotypes of each SNP on birth weight (BW), weaning weight adjusted to 210 days of age (W210), females yearling weight adjusted to 550 days of age (W550), female yearling hip height (H550), males yearling weight adjusted to 378 days of age (W378), male yearling hip height (H378), loin eye area (LEA), backfat thickness (BF) and rump fat thickness (RF).