Table 2.
Expression profiling of miRNA differentially expressed in A. thaliana leaf tissues in response to LPS elicitation (L0 = untreated control, L3 = treated for 3 h)
| miRNA | Mature sequence | Length | LO (count) | L3 (count) | L3/L0 | Fold-change log 2 L3/L0 |
|---|---|---|---|---|---|---|
| miR158 | TCCCAAATGTAGACAAAGCA | 20 | 95 | 45 | 0.47 | −1.1 ↓ |
| miR160 | TGCCTGGCTCCCTGTATGCCA | 21 | 0 | 3 | NA* | |
| miR167 | TGAAGCTGCCAGCATGATCTA | 21 | 13 | 59 | 4.54 | 2.2 ↑ |
| miR169 | TAGCCAAGGATGACTTGCCT | 20 | 0 | 9 | NA* | |
| miR173 | TTCGCTTGCAGAGAGAAATCAC | 22 | 1 | 0 | NA* | |
| miR393 | ATCATGCGATCTCTTTGGAT | 20 | 3 | 0 | NA* | |
| miR396 | TTCCACAGCTTTCTTGAACT | 20 | 314 | 140 | 0.45 | −1.2 ↓ |
| miR398 | TGTGTTCTCAGGTCACCCCTG | 21 | 2 | 6 | 3 | 1.6 ↑ |
| miR408 | ATGCACTGCCTCTTCCCTGGC | 21 | 0 | 1 | NA* | |
| miR472 | TTTTTCCTACTCCGCCCATACC | 22 | 0 | 2 | NA* | |
| miR5014 | TTTTCACTGTTTGATTCGTACACT | 24 | 1 | 0 | NA* | |
| miR5635 | GTATAAAACGATCATTTCAAGAGT | 24 | 2 | 5 | 2.5 | 1.3 ↑ |
| miR5642 | TCGACACCTTGCGGCTAGGAAC | 22 | 15 | 41 | 2.73 | 1.4 ↑ |
| miR5651 | GTTCGATCACCATTCGGAGCCT | 22 | 1 | 0 | NA* | |
| miR5653 | AACTCAACCCATGAACCCTAATGA | 24 | 1 | 0 | NA* | |
| miR5662 | ATTTTAGAGGTGACTAT | 17 | 0 | 1 | NA* | |
| miR5998 | TGTTTTGTTTTGTGATGTTGGAACAAAT | 28 | 0 | 1 | NA* | |
| miR775 | TTCGATGTCTAGCAGTGCCT | 20 | 0 | 2 | NA* | |
| miR829 | AGCTCTGATACCAAATGA | 18 | 3 | 0 | NA* | |
| miR840 | TTGTTTAGGTCCCTTAGTTTCT | 22 | 0 | 1 | NA* | |
| miR850 | AAGATCCGGACTACAACAAAGC | 22 | 1 | 0 | NA* |
NA*: Relative change was not calculated as they contained 0 reads in one sample; Log2 ratio of normalized miRNA expression in stress and control libraries.
L0: control, L3: treated condition; ↑ and ↓: up- and down regulated responses.