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. 2015 Feb 12;16(1):33. doi: 10.1186/s13059-015-0598-0

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© Song and Chen; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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ChromHMM results for cell line GM12878 for 20 chromatin states. Shown are the emission matrix, state annotation and enrichment of biological features. Refer to caption of Figure 2. Art, artificial; CpGI, CpG island; DRM, gene-distal regulatory module; Enh, strong enhancer; EnhP, poised enhancer; EnhW, weak enhancer; kb, kilobase; Num, number; Pol2, RNA polymerase II binding; PRM, promoter-proximal regulatory module; Prom, strong promoter; PromF, promoter flanking; PromP, poised promoter; PromW, weak promoter; Repr, repressed region; TSS, transcription start site; Txn, transcribed region.