Table 1.
Fraction of null segments for ten ENCODE cell types
| Binarization | Cell type | |||
|---|---|---|---|---|
| GM12878 | H1-hESC | HeLa-S3* | HepG2* | |
| Scripture [38] | 0.5 | 0.59 | 0.47 | 0.52 |
| Poisson binarization [7] | 0.92 | 0.92 | 0.89 | 0.89 |
| HMEC | HSMM | HUVEC | K562 | |
| Scripture [38] | 0.48 | 0.49 | 0.55 | 0.56 |
| Poisson binarization [7] | 0.90 | 0.89 | 0.89 | 0.91 |
| NHEK | NHLF | |||
| Scripture [38] | 0.57 | 0.51 | ||
| Poisson binarization [7] | 0.91 | 0.91 | ||
Cell types with * have only seven available epigenetic marks for the Poisson binarization data set. All other cell types have eight epigenetic marks for both binarization data sets.